Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C09
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 105 2e-23
sp|P21559|P34_RICRI Protein p34 30 1.3
sp|P27402|BEL1_SFV3L BEL-1 protein 29 2.9
sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G (G... 24 4.5
sp|Q9ZCC5|P34_RICPR Protein p34 28 6.5
sp|Q32007|NU5C_CICIN NAD(P)H-quinone oxidoreductase chain 5... 28 8.5
sp|Q91ZZ5|LGR8_MOUSE Relaxin receptor 2 (Leucine-rich repea... 28 8.5
sp|Q661W1|MRAY_BORGA Phospho-N-acetylmuramoyl-pentapeptide-... 28 8.5
sp|Q17704|DHBW_CAEEL Putative steroid dehydrogenase C06B3.5 28 8.5
sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1 28 8.5
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 105 bits (263), Expect = 2e-23
Identities = 52/112 (46%), Positives = 73/112 (65%)
Frame = +1
Query: 1 LGTISVVYLFLLVIIKAVIWGIHIDFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIH 180
LGTISV+YL + V K + G+++DF S+ Y+ A + F L+G +L++FIHNA+
Sbjct: 375 LGTISVMYLLMFVFSKLLECGVNMDFSNPKSIHYVQLANMHFPALSGTLTLSYFIHNAVL 434
Query: 181 SIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSKDCIQDNLLNN 336
+I+R+Q PENN RDL I Y VA Y+ IG F+ FP+ + CI DN LNN
Sbjct: 435 TILRNQKHPENNARDLSIGYCLVAFCYVFIGFTFFAAFPVQRSCISDNFLNN 486
>sp|P21559|P34_RICRI Protein p34
Length = 301
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 154 AFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSK 306
AFF+ + + + KPEN + + YVC+ +L I ++FY T+ + K
Sbjct: 95 AFFVGFSSVKSLFEKTKPENISDGTTVMYVCI---FLTIILVFYQTYVIKK 142
>sp|P27402|BEL1_SFV3L BEL-1 protein
Length = 298
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 202 LPDCERLNEWRCG*KMLNYQPQLKR*KSREHLEYMIDW*ESKNRYEY 62
+PD E++++W C +L K+ K ++Y I W +SK +Y
Sbjct: 84 VPDPEKMSKWACARLILCGLYNAKKAKELLKMDYDIHWEQSKEDSQY 130
>sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G (Gamma cysteine string protein)
(Gamma-CSP)
Length = 189
Score = 24.3 bits (51), Expect(2) = 4.5
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +3
Query: 234 CLCVCCCYISG 266
C C CCC+ G
Sbjct: 138 CFCCCCCFCCG 148
Score = 23.1 bits (48), Expect(2) = 4.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 225 LIDCLCVCCC 254
L+ C C CCC
Sbjct: 133 LLTCCCFCCC 142
>sp|Q9ZCC5|P34_RICPR Protein p34
Length = 300
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 154 AFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSK 306
AFF+ A + + KPEN + +I Y+C+ +L I ++ Y T+ + K
Sbjct: 94 AFFVGFASVKSLFIKTKPENISDGTIIMYLCM---FLTIILVLYQTYVIKK 141
>sp|Q32007|NU5C_CICIN NAD(P)H-quinone oxidoreductase chain 5, chloroplast (NAD(P)H
dehydrogenase, chain 5) (NADH-plastoquinone
oxidoreductase chain 5)
Length = 741
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 53 SYGVFISIFTFLPVYHIFQ 109
S+G+FI+ F + PVY FQ
Sbjct: 612 SFGIFIAFFLYKPVYSTFQ 630
>sp|Q91ZZ5|LGR8_MOUSE Relaxin receptor 2 (Leucine-rich repeat-containing G-protein
coupled receptor 8) (G-protein coupled receptor
affecting testicular descent) (G-protein coupled
receptor 106)
Length = 737
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 18/86 (20%)
Frame = +1
Query: 67 HIDFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSI------------------VR 192
HI SY+P+ R+ G+ S + N I + VR
Sbjct: 364 HIYLKTFRYCSYVPHVRICMPSTDGISSSEDLLANGILRVSVWVIAFITCVGNFLVIAVR 423
Query: 193 SQAKPENNTRDLLIAYVCVAATYLGI 270
S K EN T + I +C A +G+
Sbjct: 424 SLIKAENTTHAMSIKILCCADCLMGV 449
>sp|Q661W1|MRAY_BORGA Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 351
Score = 27.7 bits (60), Expect = 8.5
Identities = 18/93 (19%), Positives = 37/93 (39%)
Frame = +1
Query: 7 TISVVYLFLLVIIKAVIWGIHIDFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSI 186
T+ + +F V I V W ++ YFL + V+ G L F I
Sbjct: 65 TMGGILIFFCVFISLVFWSNILNVYFL----------IMLFVMLGFAFLGF-----IDDF 109
Query: 187 VRSQAKPENNTRDLLIAYVCVAATYLGIGVIFY 285
++ + K + + Y + +++ +G ++Y
Sbjct: 110 LKIKKKTSDGLKARFKIYGQIIFSFISVGTLYY 142
>sp|Q17704|DHBW_CAEEL Putative steroid dehydrogenase C06B3.5
Length = 349
Score = 27.7 bits (60), Expect = 8.5
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Frame = +1
Query: 1 LGTISVVYLFLLVIIKAVIWGIHIDFYFLTSLSYIPNARVTFIVLT----GVG-SLAFFI 165
+G ++V L++L +IW I + F + A ++ V+T G+G S +F +
Sbjct: 8 IGVGAIVVLYILYHFIKMIWSILGLYVFYQPIDLKKKAGASWAVITGGTDGIGKSFSFEL 67
Query: 166 HNA---IHSIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSKDCIQD--NLL 330
I+ + R+Q+K E ++++ Y V + + TF + I D LL
Sbjct: 68 AKRGFNIYIVSRTQSKLEQTKKEIMEKYSNVE--------VRFATFDFTNPSISDYKKLL 119
Query: 331 NNLSQ 345
+ L++
Sbjct: 120 SQLNE 124
>sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1
Length = 3092
Score = 27.7 bits (60), Expect = 8.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = +1
Query: 64 IHIDFYF---LTSLSYIPNARVTFIVLTGVG------SLAFFIHNAIHSIVRSQAKPENN 216
I + +F L S Y+P +L VG SL + N HS+ +++ PE N
Sbjct: 2563 ISVSIFFESPLLSQMYLPEILFAVSLLIDVGPSEIRVSLYELLMNVCHSLTNNESLPERN 2622
Query: 217 TRDLLIAYVCVAATYLGIGVIFYVTFPLSKDCIQDN 324
++L I V AT+ + F F K + N
Sbjct: 2623 RKNLDI----VCATFARQKLNFISGFSQEKGRVLPN 2654
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,487,209
Number of Sequences: 369166
Number of extensions: 802262
Number of successful extensions: 1943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1933
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)