Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N21
(343 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 49 3e-06
sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-... 31 0.78
sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide sy... 30 1.3
sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thyla... 30 1.3
sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein 29 3.0
sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Tr... 29 3.0
sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-... 29 3.0
sp|P26813|DNLI_ASFM2 DNA ligase (Polydeoxyribonucleotide sy... 28 5.0
sp|Q929Y0|MRAY_LISIN Phospho-N-acetylmuramoyl-pentapeptide-... 28 6.6
sp|Q50782|MVHG_METTH F420-non-reducing hydrogenase subunit ... 28 6.6
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 49.3 bits (116), Expect = 3e-06
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +1
Query: 46 FSIFLPHIGEIARFSGSICGLVYMITLPALVKIRRMQKEGKLTVWSFXXXXXXXXXXXXN 225
F+ F P++G I R+ GSI GLVY+ LPA+V I++ + G LT N
Sbjct: 549 FATFYPNVGSILRYVGSISGLVYVFALPAMVYIKQSEAAGTLTPMKKYAHYGIIVIGVAN 608
Query: 226 FLGQFV 243
+ QFV
Sbjct: 609 LIAQFV 614
>sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 31.2 bits (69), Expect = 0.78
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 159 GRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYKPLGSIYRIFILFLLLGFEKSTD 323
G+ LVF+F YR + + + V + PLG Y +FI+F L+GF + +
Sbjct: 119 GQIFGGLVFYFVYRSEGFSDTLDLFGVAEV---PLGIFYGVFIIFWLVGFSNAVN 170
>sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 419
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 165 KTNSLVFHFTYRFDCYWSSQFSRP 236
KT+S HF Y FDC+WS Q P
Sbjct: 221 KTDSSELHF-YVFDCFWSDQLQMP 243
>sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thylakoid membrane protein)
(Photosystem II protein D1)
Length = 360
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +3
Query: 177 LVFHFTYRFDCYWSSQFS-------RP-VCVLFYKPLGSIYRIFILF 293
+VFHF CY Q+ RP +CV + PL + + +F+++
Sbjct: 115 VVFHFLLGISCYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIY 161
>sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein
Length = 73
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 204 DCYWSSQFSRPVCVLFYKPLGSIYRIFILFLL 299
D YW RP+C ++ + Y I++L L+
Sbjct: 16 DFYWDFSMIRPICTIWTYSISCTYGIYLLILI 47
>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Transcription factor PI)
Length = 208
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 191 KMKDQTVSFPSFCILLIFTNAGKVIIYTKPQMDPLNRAISPMCGKNIENKTQISNKAMW 15
K K+ TV + L+IF + GK+I Y P MD G ++ ++S K +W
Sbjct: 31 KAKEITVLCDAKVALIIFASNGKMIDYCCPSMD---------LGAMLDQYQKLSGKKLW 80
>sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 NKKNAEGRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYK---PLGSIYRIFILFLLLGFE 311
+K+ G+ ++F+ YR + Y P + F+ PLG Y +F +F L+GF
Sbjct: 114 SKQKLLGQIIGGIIFYLVYRSEGY-------PGTLNFFGIELPLGLFYGVFAIFWLVGFS 166
Query: 312 KSTD 323
+ +
Sbjct: 167 NAVN 170
>sp|P26813|DNLI_ASFM2 DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 419
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 165 KTNSLVFHFTYRFDCYWSSQFSRP 236
K +S HF Y FDC+WS Q P
Sbjct: 221 KADSSELHF-YVFDCFWSDQLQMP 243
>sp|Q929Y0|MRAY_LISIN Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 324
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 NKKNAEGRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYKP---LGSIYRIFILFLLLGFE 311
+K+ G+ S++F+ Y F S F+ + + F LG + IFILF L+GF
Sbjct: 113 SKQKFLGQVAISILFYLVYHF-----SDFAETLKIPFTNTEIDLGWFFIIFILFWLVGFS 167
Query: 312 KSTD 323
+ +
Sbjct: 168 NAVN 171
>sp|Q50782|MVHG_METTH F420-non-reducing hydrogenase subunit G (Methyl viologen-reducing
hydrogenase gamma subunit) (MVH subunit G)
Length = 308
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 73 EIARFSGSICGLVYMITLPALVKIRRMQKEGK 168
E+A I G Y TLPA + ++QKEGK
Sbjct: 277 EVAEQLDDIVGTFYTFTLPAALIPMKIQKEGK 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,117,012
Number of Sequences: 369166
Number of extensions: 726346
Number of successful extensions: 1675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)