Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_E21
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 115 9e-26
sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-... 31 2.3
sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide sy... 30 3.9
sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thyla... 30 3.9
sp|Q8YWC2|GPDA_ANASP Glycerol-3-phosphate dehydrogenase [NA... 30 3.9
sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein 29 8.8
sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Tr... 29 8.8
sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-... 29 8.8
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 115 bits (288), Expect = 9e-26
Identities = 63/177 (35%), Positives = 86/177 (48%)
Frame = +2
Query: 2 RTQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSKDCIXXXXXXXXXXXXXXAFIG 181
R Q PENN RDL I Y VA Y+ IG F+ FP+ + CI +
Sbjct: 438 RNQKHPENNARDLSIGYCLVAFCYVFIGFTFFAAFPVQRSCISDNFLNNFGAGDVLSSTA 497
Query: 182 RIFLFFQILTVFPLLMYILRSQFMYFFFKKFYPSWXXXXXXXXXXXXXXXXFSIFLPHIG 361
R+FL FQ++TV PLLM+++RSQ Y F + +P F+ F P++G
Sbjct: 498 RLFLLFQMITVLPLLMFLVRSQLFYAIFGQTWPGAIRVIILNVLLIAVAVGFATFYPNVG 557
Query: 362 EIARFSGSICGLVYMITLPALVKIRRMQKEGKLTVWSFXXXXXXXXXXXXNFLGQFV 532
I R+ GSI GLVY+ LPA+V I++ + G LT N + QFV
Sbjct: 558 SILRYVGSISGLVYVFALPAMVYIKQSEAAGTLTPMKKYAHYGIIVIGVANLIAQFV 614
>sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 448 GRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYKPLGSIYRIFILFLLLGFEKSTD 612
G+ LVF+F YR + + + V + PLG Y +FI+F L+GF + +
Sbjct: 119 GQIFGGLVFYFVYRSEGFSDTLDLFGVAEV---PLGIFYGVFIIFWLVGFSNAVN 170
>sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 419
Score = 30.4 bits (67), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 454 KTNSLVFHFTYRFDCYWSSQFSRP 525
KT+S HF Y FDC+WS Q P
Sbjct: 221 KTDSSELHF-YVFDCFWSDQLQMP 243
>sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thylakoid membrane protein)
(Photosystem II protein D1)
Length = 360
Score = 30.4 bits (67), Expect = 3.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +1
Query: 466 LVFHFTYRFDCYWSSQFS-------RP-VCVLFYKPLGSIYRIFILF 582
+VFHF CY Q+ RP +CV + PL + + +F+++
Sbjct: 115 VVFHFLLGISCYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIY 161
>sp|Q8YWC2|GPDA_ANASP Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent
glycerol-3-phosphate dehydrogenase)
Length = 307
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 228 ISNGNTVNIWKKRNIRPMKANKSFCDKLFSKLS*MQSLERGNVT*NITPIPRYVAATHT 52
I+NGN V +W +R + A D + S +S E + ++TP P + T T
Sbjct: 23 IANGNRVRVWSRRGSETLSAVLQGADIVLSAISMKGVREVASQIQSLTPSPETIFVTAT 81
>sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein
Length = 73
Score = 29.3 bits (64), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 493 DCYWSSQFSRPVCVLFYKPLGSIYRIFILFLL 588
D YW RP+C ++ + Y I++L L+
Sbjct: 16 DFYWDFSMIRPICTIWTYSISCTYGIYLLILI 47
>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Transcription factor PI)
Length = 208
Score = 29.3 bits (64), Expect = 8.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 480 KMKDQTVSFPSFCILLIFTNAGKVIIYTKPQMDPLNRAISPMCGKNIENKTQISNKAMW 304
K K+ TV + L+IF + GK+I Y P MD G ++ ++S K +W
Sbjct: 31 KAKEITVLCDAKVALIIFASNGKMIDYCCPSMD---------LGAMLDQYQKLSGKKLW 80
>sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 29.3 bits (64), Expect = 8.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 430 NKKNAEGRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYK---PLGSIYRIFILFLLLGFE 600
+K+ G+ ++F+ YR + Y P + F+ PLG Y +F +F L+GF
Sbjct: 114 SKQKLLGQIIGGIIFYLVYRSEGY-------PGTLNFFGIELPLGLFYGVFAIFWLVGFS 166
Query: 601 KSTD 612
+ +
Sbjct: 167 NAVN 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,027,324
Number of Sequences: 369166
Number of extensions: 1505261
Number of successful extensions: 3456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3445
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)