Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_D20
(939 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 108 3e-23
sp|Q9DCP2|S38A3_MOUSE System N amino acid transporter 1 (SN... 44 7e-04
sp|Q99624|S38A3_HUMAN System N amino acid transporter 1 (SN... 44 7e-04
sp|Q9JHZ9|S38A3_RAT System N amino acid transporter 1 (SN1)... 44 7e-04
sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein (T... 43 0.001
sp|P34479|YMJ2_CAEEL Hypothetical protein F59B2.2 in chromo... 34 0.68
sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid trans... 33 1.2
sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transpo... 33 1.2
sp|O60170|MEU22_SCHPO Probable amino-acid permease meu22 (M... 33 1.2
sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid trans... 33 1.2
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 108 bits (269), Expect = 3e-23
Identities = 51/108 (47%), Positives = 73/108 (67%)
Frame = +2
Query: 611 FDKLWNQTHTVPFWLLIVVLPLISIKSPTFFTKFNALGTVSVVYLFLLVIIKAVIWGIHI 790
FDK W TVP +L + PL++ KSPTFFTKFN LGT+SV+YL + V K + G+++
Sbjct: 339 FDKFWTLRGTVPIYLAFALFPLMNFKSPTFFTKFNVLGTISVMYLLMFVFSKLLECGVNM 398
Query: 791 DFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSIVRSQAKPENN 934
DF S+ Y+ A + F L+G +L++FIHNA+ +I+R+Q PENN
Sbjct: 399 DFSNPKSIHYVQLANMHFPALSGTLTLSYFIHNAVLTILRNQKHPENN 446
Score = 99.4 bits (246), Expect = 1e-20
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Frame = +1
Query: 31 GTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVLKS--- 201
G Q S +TIFSIWNTMMGTSLL+MPWA+QQ+G LGI +M+ +A + FYTAY+V++S
Sbjct: 161 GKQGSIVTIFSIWNTMMGTSLLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKR 220
Query: 202 TENLPLEPGRTAFTSDFSDACKFYLGRPGE 291
++L ++P ++FSD CK GR GE
Sbjct: 221 LQDLSVDP----LLAEFSDVCKSLFGRIGE 246
>sp|Q9DCP2|S38A3_MOUSE System N amino acid transporter 1 (SN1) (N-system amino acid
transporter 1) (Solute carrier family 38 member 3)
(mNAT)
Length = 505
Score = 43.9 bits (102), Expect = 7e-04
Identities = 22/65 (33%), Positives = 41/65 (63%)
Frame = +1
Query: 10 PSQTTPPGTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYL 189
P T G S +++F++ N +MG+ +L + +A+ +G L +FL+ VA L+ Y+ +L
Sbjct: 56 PHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHL 115
Query: 190 VLKST 204
+LKS+
Sbjct: 116 LLKSS 120
>sp|Q99624|S38A3_HUMAN System N amino acid transporter 1 (SN1) (N-system amino acid
transporter 1) (Solute carrier family 38 member 3)
Length = 504
Score = 43.9 bits (102), Expect = 7e-04
Identities = 22/65 (33%), Positives = 41/65 (63%)
Frame = +1
Query: 10 PSQTTPPGTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYL 189
P T G S +++F++ N +MG+ +L + +A+ +G L +FL+ VA L+ Y+ +L
Sbjct: 57 PHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHL 116
Query: 190 VLKST 204
+LKS+
Sbjct: 117 LLKSS 121
>sp|Q9JHZ9|S38A3_RAT System N amino acid transporter 1 (SN1) (N-system amino acid
transporter 1) (Solute carrier family 38 member 3)
Length = 504
Score = 43.9 bits (102), Expect = 7e-04
Identities = 22/65 (33%), Positives = 41/65 (63%)
Frame = +1
Query: 10 PSQTTPPGTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYL 189
P T G S +++F++ N +MG+ +L + +A+ +G L +FL+ VA L+ Y+ +L
Sbjct: 56 PHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHL 115
Query: 190 VLKST 204
+LKS+
Sbjct: 116 LLKSS 120
>sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein (Tyrosine permease)
sp|P0AAD5|TYRP_SHIFL Tyrosine-specific transport protein (Tyrosine permease)
Length = 403
Score = 43.1 bits (100), Expect = 0.001
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +1
Query: 52 TIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVLKSTENLPLEPGR 231
++F + T +G +L+MP A GF++ + L+I + L YTA L+L+ +++P + G
Sbjct: 8 SVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTG- 66
Query: 232 TAFTSDFSDACKFYLGRPGE 291
K YLGR G+
Sbjct: 67 ------LGTLAKRYLGRYGQ 80
>sp|P34479|YMJ2_CAEEL Hypothetical protein F59B2.2 in chromosome III
Length = 460
Score = 33.9 bits (76), Expect = 0.68
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 25 PPGTQSSFIT----IFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLV 192
PP IT + ++ +M S+P+A + G + + ++AGL +Y +++
Sbjct: 29 PPARSGDVITPTRAVLTLSKSMFNAGCFSLPYAWKLGGLWVSFVMSFVIAGLNWYGNHIL 88
Query: 193 LKSTENLPLEPGRTA 237
++++++L + R+A
Sbjct: 89 VRASQHLAKKSDRSA 103
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (hVIAAT)
(Solute carrier family 32 member 1)
Length = 525
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 58 FSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVL 195
+++ N + G +L +P+AI G+ LG+FL+I A + YT +++
Sbjct: 123 WNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILI 167
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (rGVAT)
(Solute carrier family 32 member 1)
Length = 525
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 58 FSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVL 195
+++ N + G +L +P+AI G+ LG+FL+I A + YT +++
Sbjct: 123 WNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILI 167
>sp|O60170|MEU22_SCHPO Probable amino-acid permease meu22 (Meiotic expression up-regulated
protein 22)
Length = 574
Score = 33.1 bits (74), Expect = 1.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 614 DKLWNQTHTVPFWL-LIVVLPLISIKSPTFFTKFNALGTVSV-VYLFLLVIIKAVIWG 781
D W + +WL V +PL +P +NA G VS+ + +F ++II IWG
Sbjct: 136 DPAWGFAVGIQYWLSFAVTVPLELTVAPLIINFWNASGPVSIWISVFYVIIIAINIWG 193
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (mVIAAT)
(mVGAT) (Solute carrier family 32 member 1)
Length = 525
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 58 FSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVL 195
+++ N + G +L +P+AI G+ LG+FL+I A + YT +++
Sbjct: 123 WNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILI 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,410,240
Number of Sequences: 369166
Number of extensions: 2080694
Number of successful extensions: 5034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5033
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)