Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_M14
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 182 1e-45
sp|P43993|Y392_HAEIN Hypothetical protein HI0392 33 0.72
sp|O60170|MEU22_SCHPO Probable amino-acid permease meu22 (M... 33 1.2
sp|Q7VRC5|AROQ_BLOFL 3-dehydroquinate dehydratase (3-dehydr... 31 3.6
sp|Q9PR97|Y048_UREPA Hypothetical protein UU048 31 3.6
sp|P39981|AVT2_YEAST Vacuolar amino acid transporter 2 31 4.7
sp|P31077|PSRC_WOLSU Polysulfide reductase chain C (Sulfur ... 30 6.1
sp|P21559|P34_RICRI Protein p34 30 6.1
sp|Q8YWC2|GPDA_ANASP Glycerol-3-phosphate dehydrogenase [NA... 30 6.1
sp|Q9ZB72|Y350A_MYCGE Hypothetical protein MG350.1 30 8.0
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 182 bits (461), Expect = 1e-45
Identities = 93/228 (40%), Positives = 131/228 (57%)
Frame = +2
Query: 134 FDKLWNQTHTVPFWLLIVVLPLISIKSPTFFTKFNALGTISVVYLFLLVIIKAVIWGIHI 313
FDK W TVP +L + PL++ KSPTFFTKFN LGTISV+YL + V K + G+++
Sbjct: 339 FDKFWTLRGTVPIYLAFALFPLMNFKSPTFFTKFNVLGTISVMYLLMFVFSKLLECGVNM 398
Query: 314 DFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVA 493
DF S+ Y+ A + F L+G +L++FIHNA+ +I+R+Q PENN RDL I Y VA
Sbjct: 399 DFSNPKSIHYVQLANMHFPALSGTLTLSYFIHNAVLTILRNQKHPENNARDLSIGYCLVA 458
Query: 494 ATYLGIGVIFYVTFPLSKDCIXXXXXXXXXXXXXXAFIGRIFLFFQILTVFPLLMYILRS 673
Y+ IG F+ FP+ + CI + R+FL FQ++TV PLLM+++RS
Sbjct: 459 FCYVFIGFTFFAAFPVQRSCISDNFLNNFGAGDVLSSTARLFLLFQMITVLPLLMFLVRS 518
Query: 674 QFMYFFFKKFYPSWXXXXXXXXXXXXXXXXFSIFLPHIGEIARFSGSI 817
Q Y F + +P F+ F P++G I R+ GSI
Sbjct: 519 QLFYAIFGQTWPGAIRVIILNVLLIAVAVGFATFYPNVGSILRYVGSI 566
>sp|P43993|Y392_HAEIN Hypothetical protein HI0392
Length = 245
Score = 33.5 bits (75), Expect = 0.72
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Frame = +2
Query: 119 MRKSVFDKLWNQTHTVPFWLLIV------VLPLISIKSPTFFTKFNALGTISVVYLFLLV 280
+ + FD N+ + W L V + PLI I + F + L I+++ F+L+
Sbjct: 83 LTQGYFDLSANENPVLHIWSLAVEGQYYLIFPLILILAYKKFREVKVLFIITLILFFILL 142
Query: 281 IIKAVIWGIHIDFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSIVRSQAKPENNT 460
V + + ++ Y+ N R ++ VGSL HN + + S K NN
Sbjct: 143 ATSFVSANFYKEVLHQPNIYYLSNLRFPELL---VGSLLAIYHNLSNKVQLS--KQVNNI 197
Query: 461 RDLLIAYVCVAATYL 505
+L + + +L
Sbjct: 198 LAILSTLLLFSCLFL 212
>sp|O60170|MEU22_SCHPO Probable amino-acid permease meu22 (Meiotic expression up-regulated
protein 22)
Length = 574
Score = 32.7 bits (73), Expect = 1.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 137 DKLWNQTHTVPFWL-LIVVLPLISIKSPTFFTKFNALGTISV-VYLFLLVIIKAVIWG 304
D W + +WL V +PL +P +NA G +S+ + +F ++II IWG
Sbjct: 136 DPAWGFAVGIQYWLSFAVTVPLELTVAPLIINFWNASGPVSIWISVFYVIIIAINIWG 193
>sp|Q7VRC5|AROQ_BLOFL 3-dehydroquinate dehydratase (3-dehydroquinase) (Type II DHQase)
Length = 146
Score = 31.2 bits (69), Expect = 3.6
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Frame = +1
Query: 97 IRIIFSSYEKIGF*Q-TVESNSHSSILAVDRCFAVNIH----QISNIFHQI*CSRH-YLS 258
I I +SY+ + F + +H+SI+ D AVNI+ +SNI+ + H Y S
Sbjct: 58 INCIHNSYKNVDFIIINPAALTHTSIVLRDALLAVNINFIEVHLSNIYKREKFRHHSYFS 117
Query: 259 GL-------FVFIGYHQGCHMGYSY 312
+ F GYH HM Y Y
Sbjct: 118 DIATGFICGFGIEGYHFALHMAYKY 142
>sp|Q9PR97|Y048_UREPA Hypothetical protein UU048
Length = 496
Score = 31.2 bits (69), Expect = 3.6
Identities = 20/91 (21%), Positives = 49/91 (53%)
Frame = +2
Query: 41 IPMKNSSLVDNLLLQDFLKSESSLVHMRKSVFDKLWNQTHTVPFWLLIVVLPLISIKSPT 220
+P+ N+ L+ +LQ F +++M ++ +L ++ L+V ++S+ S
Sbjct: 312 LPVGNNHLLWVYILQSFFAIIILILYMVFTLKKRLSVKSSLNTLLNLVVTQTILSL-SLF 370
Query: 221 FFTKFNALGTISVVYLFLLVIIKAVIWGIHI 313
T FN+ +S++ +F+ + ++ ++GI+I
Sbjct: 371 LVTLFNSKSVVSLINVFITITVQMSVFGIYI 401
>sp|P39981|AVT2_YEAST Vacuolar amino acid transporter 2
Length = 480
Score = 30.8 bits (68), Expect = 4.7
Identities = 43/208 (20%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Frame = +2
Query: 107 SLVHMRKSVFDKLWNQTHTVPFWL---LIVVL-------PLISIKSPTFFTKFNALGTIS 256
++ H+ +++F + H FWL +I+V+ PL ++ +K + L IS
Sbjct: 168 TIPHVLRAIFSQNDGNVH---FWLRRNVIIVMVTTFISFPLSMKRNIEALSKASFLAVIS 224
Query: 257 VVYLFLLVIIKAVI----WGIH---IDFYFLTSLSYIPNARVTFIVLT--GVGSLAFFIH 409
++ + L V+I+ + W H + +F+ + + + ++F ++ + F +
Sbjct: 225 MIIIVLTVVIRGPMLPYDWKGHSLKLSDFFMKATIFRSLSVISFALVCHHNTSFIFFSMR 284
Query: 410 NAIHSIVRSQAKPENNTR-DLLIAYVCVAATYLGIGVIFYVTFPLSKDCIXXXXXXXXXX 586
N RS AK T ++I+ +C A ++ Y F + K+
Sbjct: 285 N------RSVAKFTRLTHISIIISVICCA-------LMGYSGFAVFKEKTKGNVLNSFPG 331
Query: 587 XXXXAFIGRIFLFFQILTVFPLLMYILR 670
I R+ F +LT FP+ +++LR
Sbjct: 332 TDTAINIARLCFGFNMLTTFPMEIFVLR 359
>sp|P31077|PSRC_WOLSU Polysulfide reductase chain C (Sulfur reductase chain C)
Length = 317
Score = 30.4 bits (67), Expect = 6.1
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +2
Query: 143 LWNQTHTVPFWLLIVVLPLISIKSPTFFTKFNALGTISVVYLFLLVIIKAVIWGIHIDFY 322
+++ T + FW L++ S+ + F VV +FLL + K + F
Sbjct: 74 IFDLTRPLHFWKLLIFYNFSSVMTLGVLALF---AYFPVVLIFLLGVFKKELCD-EGPFG 129
Query: 323 FLTSLSYI------PNARVTFIVLTGVGSLAFFIHNAIHS 424
FL L+ I P VTF++ GVG+ F+ +A++S
Sbjct: 130 FLAPLANIAYSMARPLEIVTFVLAIGVGAYTGFLLSAMYS 169
>sp|P21559|P34_RICRI Protein p34
Length = 301
Score = 30.4 bits (67), Expect = 6.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 395 AFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSK 547
AFF+ + + + KPEN + + YVC+ +L I ++FY T+ + K
Sbjct: 95 AFFVGFSSVKSLFEKTKPENISDGTTVMYVCI---FLTIILVFYQTYVIKK 142
>sp|Q8YWC2|GPDA_ANASP Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent
glycerol-3-phosphate dehydrogenase)
Length = 307
Score = 30.4 bits (67), Expect = 6.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 657 ISNGNTVNIWKKRNIRPMKANKSFCDKLFSKLS*MQSLERGNVT*NITPIPRYVAATHT 481
I+NGN V +W +R + A D + S +S E + ++TP P + T T
Sbjct: 23 IANGNRVRVWSRRGSETLSAVLQGADIVLSAISMKGVREVASQIQSLTPSPETIFVTAT 81
>sp|Q9ZB72|Y350A_MYCGE Hypothetical protein MG350.1
Length = 224
Score = 30.0 bits (66), Expect = 8.0
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +2
Query: 104 SSLVHMRKSVFDKLWNQTHTVPFWLLIVVLPLIS-IKSPTFFTKFNALGTISVVYLFLLV 280
+ LV + K + +L+N T + L ++ LIS S FF++ ISVV+L
Sbjct: 4 NKLVFLPKKSYHQLFNITFSAMMLALAIITSLISEFISIPFFSQLKLTFDISVVFLVACA 63
Query: 281 IIKAVIWGIHIDF-YFLTSLSYIPNARVTFIVLT 379
++ W + I LTS + N + + +T
Sbjct: 64 FFVSLGWSLTITLASALTSFFWNTNNVIGVLTVT 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,290,279
Number of Sequences: 369166
Number of extensions: 2008163
Number of successful extensions: 4708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4696
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)