Planarian EST Database

DrC_00864

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00864 AAACAAGAGAGATGGGTATAAGTCAAGATAGCTGGCACAAAAGAAGGAAGACTGGTGGTC GTAGACCTCAGCCACATAAAAAGAGGAAGTACGAATTGGGCAGACCTGCAGCCAACACCA AATTAGCTCCTAAAAGAATTCATGATGTTCGTGTTCGTGGTGGAAATATCAAAAAGCGTG CTTTGAGATTAGATCACGGCAATTTCAGTTGGGCACATCAAGCTGTTTCTCGTAAAGCAA GAATCATTGATACCGTTTATAATGCATCAAACAATGAATTAGTCAGAACTAAAACCTTAG TTAAAAATACTATTGTCTTGATTGATGCAGCTCCATTTAAACAGTGGTATGAAGCTCATT ATTTAAAAGAAATTGGTAAAAAGAAAACTCAAAAGAAAACTGATGCTAATGAAGAACCAG AGGAATCCACTATATTTAATCAGAAGAGAAGTTCATCATGCCTTCAAAAGTATGAAGCTA GACAAAAAGACAGTGAAGTTTCAACCCAAATGAAAGAACAATTTGCCCAAGGTTCTCTTT TGGCTTGCATTTCTTCCAGACCTGGTCAAGTAGGTCGTGCTGATGGTTACATTTTAGAAG ACAAAGAATTGGAATTCTATGCTAAGAAATTAAAGGCAAAGAAATCTAAATAATTTAATT AATAAAATACTTGGATTAATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00864
         (681 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62243|RS8_RAT  40S ribosomal protein S8 >gi|54039529|sp|...   263   3e-70
sp|Q90YR6|RS8_ICTPU  40S ribosomal protein S8                     263   3e-70
sp|Q7SYU0|RS8_XENLA  40S ribosomal protein S8                     259   3e-69
sp|P62247|RS8_BRARE  40S ribosomal protein S8                     258   1e-68
sp|Q8WQI5|RS8_SPOFR  40S ribosomal protein S8                     251   2e-66
sp|O76756|RS8_APIME  40S ribosomal protein S8                     245   7e-65
sp|Q8MLY8|RS8_DROME  40S ribosomal protein S8                     238   8e-63
sp|P48156|RS8_CAEEL  40S ribosomal protein S8                     234   1e-61
sp|P49199|RS8_ORYSA  40S ribosomal protein S8                     219   5e-57
sp|Q08069|RS8_MAIZE  40S ribosomal protein S8                     216   3e-56

>sp|P62243|RS8_RAT 40S ribosomal protein S8
 sp|P62242|RS8_MOUSE 40S ribosomal protein S8
 sp|P62241|RS8_HUMAN 40S ribosomal protein S8
          Length = 208

 Score =  263 bits (672), Expect = 3e-70
 Identities = 128/196 (65%), Positives = 153/196 (78%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+D+WHKRRKTGG+R   HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSW  +  +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY   
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G         A   PEE  I N+KRS    +KY+ R+K++++S+ ++EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACI 175

Query: 552 SSRPGQVGRADGYILE 599
           +SRPGQ GRADGY+LE
Sbjct: 176 ASRPGQCGRADGYVLE 191

>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
          Length = 208

 Score =  263 bits (672), Expect = 3e-70
 Identities = 128/196 (65%), Positives = 151/196 (77%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+D+WHKRRKTGG+R   HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSW  +  +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY   
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G         A   PEE  I N+KRS    +K++ R+K+S++S  + EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACI 175

Query: 552 SSRPGQVGRADGYILE 599
           SSRPGQ GRADGY+LE
Sbjct: 176 SSRPGQCGRADGYVLE 191

>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
          Length = 208

 Score =  259 bits (663), Expect = 3e-69
 Identities = 127/196 (64%), Positives = 150/196 (76%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+D+WHKRRKTGG+R   HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSW  +  +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY   
Sbjct: 61  DAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G         A   PEE  I N+KRS    +KYE R+K +++S  ++EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACI 175

Query: 552 SSRPGQVGRADGYILE 599
           +SRPGQ GRADGY+LE
Sbjct: 176 ASRPGQCGRADGYVLE 191

>sp|P62247|RS8_BRARE 40S ribosomal protein S8
          Length = 208

 Score =  258 bits (659), Expect = 1e-68
 Identities = 124/196 (63%), Positives = 150/196 (76%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+D+WHKRR+TGG+R   HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRL
Sbjct: 1   MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSW  +  +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY   
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G         A   PEE  I N+KRS    +K+  R+K +++S  ++EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACI 175

Query: 552 SSRPGQVGRADGYILE 599
           SSRPGQ GRADGY+LE
Sbjct: 176 SSRPGQCGRADGYVLE 191

>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
          Length = 208

 Score =  251 bits (640), Expect = 2e-66
 Identities = 126/196 (64%), Positives = 147/196 (75%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+D WHKRR TGG+R    KKRKYELGRPAANTKL P+RIH VR RGGN K RALRL
Sbjct: 1   MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSW  +  +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL  
Sbjct: 61  DTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G        +A     E  I N+KRS    +KY ARQ+ S+V + ++EQF  G LLAC+
Sbjct: 121 LGRKKGAKLTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACV 175

Query: 552 SSRPGQVGRADGYILE 599
           +SRPGQ GRADGYILE
Sbjct: 176 ASRPGQCGRADGYILE 191

>sp|O76756|RS8_APIME 40S ribosomal protein S8
          Length = 207

 Score =  245 bits (626), Expect = 7e-65
 Identities = 124/196 (63%), Positives = 144/196 (73%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+D WHKRR TGG+R    KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRL 59

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSW  +  +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+  
Sbjct: 60  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 119

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G        +A EE     + N+KRS     KY+ARQ+ ++V   ++EQFA G +LACI
Sbjct: 120 LGRKRGAKLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACI 174

Query: 552 SSRPGQVGRADGYILE 599
           SSRPGQ GR DGYILE
Sbjct: 175 SSRPGQCGREDGYILE 190

>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
          Length = 208

 Score =  238 bits (608), Expect = 8e-63
 Identities = 118/196 (60%), Positives = 145/196 (73%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+DS HKRR TGG+R    KKRK+ELGRPAANTKL   R+H VR RGGN K RALRL
Sbjct: 1   MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           + GNF+WA + V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+  
Sbjct: 61  ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +G           ++ +E+ +  +KRS   ++KY  RQK  +V   +++QF  G +LACI
Sbjct: 121 LGRKRNPKHA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACI 177

Query: 552 SSRPGQVGRADGYILE 599
           SSRPGQ GR+DGYILE
Sbjct: 178 SSRPGQCGRSDGYILE 193

>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
          Length = 208

 Score =  234 bits (598), Expect = 1e-61
 Identities = 118/196 (60%), Positives = 142/196 (72%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 191
           MGIS+DSWHKR KTG  +P PHKKRK+ELGRPAANTK+   R+  VR RGGN K RALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 192 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 371
           D GNFSWA +  +RK RI+DT+YNA+NNELVRTKTLVK  I+ +DAAPF+QWYEAHY   
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 372 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 551
           +         +A    E++ I N+KRS   ++KY  RQK + V   + EQF  G LLA I
Sbjct: 121 LA-----RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARI 175

Query: 552 SSRPGQVGRADGYILE 599
           SS PGQVG+A+GYILE
Sbjct: 176 SSSPGQVGQANGYILE 191

>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
          Length = 220

 Score =  219 bits (558), Expect = 5e-57
 Identities = 116/199 (58%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALR 188
           MGIS+DS HKRR TGG++    KKRKYELGR  ANTKL+  K +  VRVRGGN+K RALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 189 LDHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLK 368
           LD GN+SW  +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY  HY  
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 369 EIGXXXXXXXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLL 542
           +IG              +  E+T    K+S+  ++K E RQ+   +   ++EQF  G LL
Sbjct: 121 DIGRKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL 180

Query: 543 ACISSRPGQVGRADGYILE 599
           ACISSRPGQ GRADGYILE
Sbjct: 181 ACISSRPGQCGRADGYILE 199

>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
          Length = 221

 Score =  216 bits (551), Expect = 3e-56
 Identities = 115/200 (57%), Positives = 140/200 (70%), Gaps = 4/200 (2%)
 Frame = +3

Query: 12  MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALR 188
           MGIS+DS HKRR TGG++    KKRKYELGR  ANTKL+  K +  VRVRGGN+K RALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 189 LDHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLK 368
           LD GN+SW  +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY  HY  
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 369 EIG---XXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSL 539
           +IG           +A  +  E+     K+S+   +K E R++   +   ++EQF  G L
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 540 LACISSRPGQVGRADGYILE 599
           LACISSRPGQ GRADGYILE
Sbjct: 181 LACISSRPGQCGRADGYILE 200

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,689,433
Number of Sequences: 369166
Number of extensions: 1138104
Number of successful extensions: 2782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2756
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00864

Planaria EST Database

DrC_00864

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail