Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_J02
(474 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 203 1e-52
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 203 2e-52
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 200 1e-51
sp|P62247|RS8_BRARE 40S ribosomal protein S8 197 8e-51
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 195 4e-50
sp|O76756|RS8_APIME 40S ribosomal protein S8 190 2e-48
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 188 6e-48
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 184 1e-46
sp|O81361|RS8_PRUAR 40S ribosomal protein S8 163 2e-40
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 162 5e-40
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 203 bits (517), Expect = 1e-52
Identities = 98/157 (62%), Positives = 118/157 (75%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 181
+WHKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 182 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 361
W + +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG---- 122
Query: 362 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
A PEE I N+KRS +K++ R+K+S++
Sbjct: 123 -RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKI 158
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 203 bits (516), Expect = 2e-52
Identities = 99/157 (63%), Positives = 118/157 (75%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 181
+WHKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 182 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 361
W + +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG---- 122
Query: 362 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
A PEE I N+KRS +KY+ R+K++++
Sbjct: 123 -RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKI 158
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 200 bits (509), Expect = 1e-51
Identities = 98/157 (62%), Positives = 116/157 (73%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 181
+WHKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFS 66
Query: 182 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 361
W + +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG---- 122
Query: 362 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
A PEE I N+KRS +KYE R+K +++
Sbjct: 123 -RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKI 158
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 197 bits (502), Expect = 8e-51
Identities = 94/157 (59%), Positives = 116/157 (73%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 181
+WHKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFS 66
Query: 182 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 361
W + +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG---- 122
Query: 362 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
A PEE I N+KRS +K+ R+K +++
Sbjct: 123 -RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKI 158
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 195 bits (496), Expect = 4e-50
Identities = 99/156 (63%), Positives = 114/156 (73%)
Frame = +2
Query: 5 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 184
WHKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW
Sbjct: 8 WHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSW 67
Query: 185 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 364
+ +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G
Sbjct: 68 GSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA 127
Query: 365 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
+A E I N+KRS +KY ARQ+ S+V
Sbjct: 128 KLTEA-----EDAIINKKRSQKTAKKYLARQRLSKV 158
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 190 bits (482), Expect = 2e-48
Identities = 96/156 (61%), Positives = 112/156 (71%)
Frame = +2
Query: 5 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 184
WHKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNFSW
Sbjct: 8 WHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNFSW 66
Query: 185 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 364
+ +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G
Sbjct: 67 GSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGA 126
Query: 365 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
+A EE + N+KRS KY+ARQ+ ++V
Sbjct: 127 KLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKV 157
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 188 bits (477), Expect = 6e-48
Identities = 92/157 (58%), Positives = 112/157 (71%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 181
SWHKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNFS
Sbjct: 7 SWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFS 66
Query: 182 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 361
WA + +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY +
Sbjct: 67 WASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA---- 122
Query: 362 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
+A E++ I N+KRS ++KY RQK + V
Sbjct: 123 -RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAV 158
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 184 bits (466), Expect = 1e-46
Identities = 92/157 (58%), Positives = 113/157 (71%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 181
S HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF+
Sbjct: 7 SAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFA 66
Query: 182 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 361
WA + V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G
Sbjct: 67 WASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRN 126
Query: 362 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEV 472
++ +E+ + +KRS ++KY RQK +V
Sbjct: 127 PKHA---QKEDENDVLTKKRSEKVMKKYLERQKYGKV 160
>sp|O81361|RS8_PRUAR 40S ribosomal protein S8
Length = 221
Score = 163 bits (412), Expect = 2e-40
Identities = 88/155 (56%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNF 178
S HKRR TGG++ KKRKYELGR ANTKL+ K + +RVRGGN+K RALRLD GNF
Sbjct: 7 SMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNF 66
Query: 179 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 358
SW +AV+RK R++D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY EIG
Sbjct: 67 SWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKK 126
Query: 359 XXXXXDANEEPE-ESTIFNQKRSSSCLQKYEARQK 460
+ E E+T K+S+ K E RQ+
Sbjct: 127 KTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQ 161
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 162 bits (409), Expect = 5e-40
Identities = 87/156 (55%), Positives = 107/156 (68%), Gaps = 3/156 (1%)
Frame = +2
Query: 2 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNF 178
S HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+
Sbjct: 7 SMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNY 66
Query: 179 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 358
SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 67 SWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKK 126
Query: 359 XXXXXDAN--EEPEESTIFNQKRSSSCLQKYEARQK 460
+ E+T K+S+ ++K E RQ+
Sbjct: 127 KEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQ 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,909,640
Number of Sequences: 369166
Number of extensions: 705855
Number of successful extensions: 1625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)