Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I23
(646 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 253 4e-67
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 253 4e-67
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 249 4e-66
sp|P62247|RS8_BRARE 40S ribosomal protein S8 248 1e-65
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 241 1e-63
sp|O76756|RS8_APIME 40S ribosomal protein S8 236 5e-62
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 228 1e-59
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 223 3e-58
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 208 1e-53
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 205 7e-53
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 253 bits (645), Expect = 4e-67
Identities = 123/189 (65%), Positives = 146/189 (77%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSW 67
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+ +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG----- 122
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
A PEE I N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SRPGQ
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQC 182
Query: 542 GRADGYILE 568
GRADGY+LE
Sbjct: 183 GRADGYVLE 191
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 253 bits (645), Expect = 4e-67
Identities = 123/189 (65%), Positives = 144/189 (76%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNFSW 67
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+ +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG----- 122
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
A PEE I N+KRS +K++ R+K+S++S + EQF QG LLACISSRPGQ
Sbjct: 123 RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQC 182
Query: 542 GRADGYILE 568
GRADGY+LE
Sbjct: 183 GRADGYVLE 191
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 249 bits (636), Expect = 4e-66
Identities = 122/189 (64%), Positives = 143/189 (75%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFSW 67
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+ +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG----- 122
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
A PEE I N+KRS +KYE R+K +++S ++EQF QG LLACI+SRPGQ
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQC 182
Query: 542 GRADGYILE 568
GRADGY+LE
Sbjct: 183 GRADGYVLE 191
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 248 bits (632), Expect = 1e-65
Identities = 119/189 (62%), Positives = 143/189 (75%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFSW
Sbjct: 8 WHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFSW 67
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+ +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG----- 122
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
A PEE I N+KRS +K+ R+K +++S ++EQF QG LLACISSRPGQ
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQC 182
Query: 542 GRADGYILE 568
GRADGY+LE
Sbjct: 183 GRADGYVLE 191
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 241 bits (615), Expect = 1e-63
Identities = 121/189 (64%), Positives = 141/189 (74%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW
Sbjct: 8 WHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSW 67
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+ +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G
Sbjct: 68 GSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA 127
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
+A E I N+KRS +KY ARQ+ S+V + ++EQF G LLAC++SRPGQ
Sbjct: 128 KLTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQC 182
Query: 542 GRADGYILE 568
GRADGYILE
Sbjct: 183 GRADGYILE 191
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 236 bits (601), Expect = 5e-62
Identities = 119/189 (62%), Positives = 138/189 (73%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNFSW
Sbjct: 8 WHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNFSW 66
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+ +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G
Sbjct: 67 GSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGA 126
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
+A EE + N+KRS KY+ARQ+ ++V ++EQFA G +LACISSRPGQ
Sbjct: 127 KLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQC 181
Query: 542 GRADGYILE 568
GR DGYILE
Sbjct: 182 GREDGYILE 190
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 228 bits (581), Expect = 1e-59
Identities = 112/188 (59%), Positives = 138/188 (73%)
Frame = +2
Query: 5 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 184
HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF+WA
Sbjct: 9 HKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWA 68
Query: 185 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 364
+ V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G
Sbjct: 69 SEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPK 128
Query: 365 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 544
++ +E+ + +KRS ++KY RQK +V +++QF G +LACISSRPGQ G
Sbjct: 129 HA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCG 185
Query: 545 RADGYILE 568
R+DGYILE
Sbjct: 186 RSDGYILE 193
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 223 bits (568), Expect = 3e-58
Identities = 112/189 (59%), Positives = 135/189 (71%)
Frame = +2
Query: 2 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 181
WHKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNFSW
Sbjct: 8 WHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSW 67
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
A + +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY +
Sbjct: 68 ASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA----- 122
Query: 362 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 541
+A E++ I N+KRS ++KY RQK + V + EQF G LLA ISS PGQV
Sbjct: 123 RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQV 182
Query: 542 GRADGYILE 568
G+A+GYILE
Sbjct: 183 GQANGYILE 191
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 208 bits (529), Expect = 1e-53
Identities = 110/191 (57%), Positives = 133/191 (69%), Gaps = 3/191 (1%)
Frame = +2
Query: 5 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSW 181
HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW
Sbjct: 9 HKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSW 68
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 361
+AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 69 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKE 128
Query: 362 XXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 535
+ E+T K+S+ ++K E RQ+ + ++EQF G LLACISSRPG
Sbjct: 129 PPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPG 188
Query: 536 QVGRADGYILE 568
Q GRADGYILE
Sbjct: 189 QCGRADGYILE 199
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 205 bits (522), Expect = 7e-53
Identities = 109/192 (56%), Positives = 133/192 (69%), Gaps = 4/192 (2%)
Frame = +2
Query: 5 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSW 181
HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW
Sbjct: 9 HKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSW 68
Query: 182 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG---XX 352
+AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 69 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKT 128
Query: 353 XXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRP 532
+A + E+ K+S+ +K E R++ + ++EQF G LLACISSRP
Sbjct: 129 PAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRP 188
Query: 533 GQVGRADGYILE 568
GQ GRADGYILE
Sbjct: 189 GQCGRADGYILE 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,222,620
Number of Sequences: 369166
Number of extensions: 1030511
Number of successful extensions: 2452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2427
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)