Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J18
(644 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 248 7e-66
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 248 7e-66
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 245 8e-65
sp|P62247|RS8_BRARE 40S ribosomal protein S8 243 2e-64
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 237 2e-62
sp|O76756|RS8_APIME 40S ribosomal protein S8 231 9e-61
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 228 1e-59
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 219 6e-57
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 208 1e-53
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 205 7e-53
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 248 bits (634), Expect = 7e-66
Identities = 122/188 (64%), Positives = 145/188 (77%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW
Sbjct: 9 HKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWG 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G
Sbjct: 69 SECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG-----R 123
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
A PEE I N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SRPGQ G
Sbjct: 124 KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCG 183
Query: 543 RADGYILE 566
RADGY+LE
Sbjct: 184 RADGYVLE 191
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 248 bits (634), Expect = 7e-66
Identities = 122/188 (64%), Positives = 143/188 (76%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNFSW
Sbjct: 9 HKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNFSWG 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G
Sbjct: 69 SECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG-----R 123
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
A PEE I N+KRS +K++ R+K+S++S + EQF QG LLACISSRPGQ G
Sbjct: 124 KKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCG 183
Query: 543 RADGYILE 566
RADGY+LE
Sbjct: 184 RADGYVLE 191
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 245 bits (625), Expect = 8e-65
Identities = 121/188 (64%), Positives = 142/188 (75%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW
Sbjct: 9 HKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFSWG 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G
Sbjct: 69 SECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG-----R 123
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
A PEE I N+KRS +KYE R+K +++S ++EQF QG LLACI+SRPGQ G
Sbjct: 124 KKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCG 183
Query: 543 RADGYILE 566
RADGY+LE
Sbjct: 184 RADGYVLE 191
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 243 bits (621), Expect = 2e-64
Identities = 118/188 (62%), Positives = 142/188 (75%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFSW
Sbjct: 9 HKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFSWG 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G
Sbjct: 69 SECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG-----R 123
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
A PEE I N+KRS +K+ R+K +++S ++EQF QG LLACISSRPGQ G
Sbjct: 124 KKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCG 183
Query: 543 RADGYILE 566
RADGY+LE
Sbjct: 184 RADGYVLE 191
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 237 bits (604), Expect = 2e-62
Identities = 120/188 (63%), Positives = 140/188 (74%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW
Sbjct: 9 HKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSWG 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G
Sbjct: 69 SECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAK 128
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
+A E I N+KRS +KY ARQ+ S+V + ++EQF G LLAC++SRPGQ G
Sbjct: 129 LTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCG 183
Query: 543 RADGYILE 566
RADGYILE
Sbjct: 184 RADGYILE 191
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 231 bits (590), Expect = 9e-61
Identities = 118/188 (62%), Positives = 137/188 (72%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNFSW
Sbjct: 9 HKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNFSWG 67
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G
Sbjct: 68 SECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAK 127
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
+A EE + N+KRS KY+ARQ+ ++V ++EQFA G +LACISSRPGQ G
Sbjct: 128 LTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCG 182
Query: 543 RADGYILE 566
R DGYILE
Sbjct: 183 REDGYILE 190
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 228 bits (581), Expect = 1e-59
Identities = 112/188 (59%), Positives = 138/188 (73%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF+WA
Sbjct: 9 HKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWA 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G
Sbjct: 69 SEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPK 128
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
++ +E+ + +KRS ++KY RQK +V +++QF G +LACISSRPGQ G
Sbjct: 129 HA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCG 185
Query: 543 RADGYILE 566
R+DGYILE
Sbjct: 186 RSDGYILE 193
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 219 bits (557), Expect = 6e-57
Identities = 111/188 (59%), Positives = 134/188 (71%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWA 182
HKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNFSWA
Sbjct: 9 HKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWA 68
Query: 183 HQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXX 362
+ +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY +
Sbjct: 69 SEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA-----R 123
Query: 363 XXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVG 542
+A E++ I N+KRS ++KY RQK + V + EQF G LLA ISS PGQVG
Sbjct: 124 KKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVG 183
Query: 543 RADGYILE 566
+A+GYILE
Sbjct: 184 QANGYILE 191
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 208 bits (529), Expect = 1e-53
Identities = 110/191 (57%), Positives = 133/191 (69%), Gaps = 3/191 (1%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSW 179
HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW
Sbjct: 9 HKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSW 68
Query: 180 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 359
+AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 69 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKE 128
Query: 360 XXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 533
+ E+T K+S+ ++K E RQ+ + ++EQF G LLACISSRPG
Sbjct: 129 PPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPG 188
Query: 534 QVGRADGYILE 566
Q GRADGYILE
Sbjct: 189 QCGRADGYILE 199
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 205 bits (522), Expect = 7e-53
Identities = 109/192 (56%), Positives = 133/192 (69%), Gaps = 4/192 (2%)
Frame = +3
Query: 3 HKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSW 179
HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW
Sbjct: 9 HKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSW 68
Query: 180 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG---XX 350
+AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 69 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKT 128
Query: 351 XXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRP 530
+A + E+ K+S+ +K E R++ + ++EQF G LLACISSRP
Sbjct: 129 PAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRP 188
Query: 531 GQVGRADGYILE 566
GQ GRADGYILE
Sbjct: 189 GQCGRADGYILE 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,975,181
Number of Sequences: 369166
Number of extensions: 1025705
Number of successful extensions: 2415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)