Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O04
(676 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 263 3e-70
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 263 3e-70
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 259 3e-69
sp|P62247|RS8_BRARE 40S ribosomal protein S8 258 1e-68
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 251 2e-66
sp|O76756|RS8_APIME 40S ribosomal protein S8 245 7e-65
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 238 8e-63
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 234 1e-61
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 219 5e-57
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 216 3e-56
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 263 bits (672), Expect = 3e-70
Identities = 128/196 (65%), Positives = 153/196 (78%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+D+WHKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSW + +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G A PEE I N+KRS +KY+ R+K++++S+ ++EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACI 175
Query: 547 SSRPGQVGRADGYILE 594
+SRPGQ GRADGY+LE
Sbjct: 176 ASRPGQCGRADGYVLE 191
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 263 bits (672), Expect = 3e-70
Identities = 128/196 (65%), Positives = 151/196 (77%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+D+WHKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSW + +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G A PEE I N+KRS +K++ R+K+S++S + EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACI 175
Query: 547 SSRPGQVGRADGYILE 594
SSRPGQ GRADGY+LE
Sbjct: 176 SSRPGQCGRADGYVLE 191
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 259 bits (663), Expect = 3e-69
Identities = 127/196 (64%), Positives = 150/196 (76%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+D+WHKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSW + +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY
Sbjct: 61 DAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G A PEE I N+KRS +KYE R+K +++S ++EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACI 175
Query: 547 SSRPGQVGRADGYILE 594
+SRPGQ GRADGY+LE
Sbjct: 176 ASRPGQCGRADGYVLE 191
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 258 bits (659), Expect = 1e-68
Identities = 124/196 (63%), Positives = 150/196 (76%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+D+WHKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRL
Sbjct: 1 MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSW + +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G A PEE I N+KRS +K+ R+K +++S ++EQF QG LLACI
Sbjct: 121 LG-----RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACI 175
Query: 547 SSRPGQVGRADGYILE 594
SSRPGQ GRADGY+LE
Sbjct: 176 SSRPGQCGRADGYVLE 191
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 251 bits (640), Expect = 2e-66
Identities = 126/196 (64%), Positives = 147/196 (75%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+D WHKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRL
Sbjct: 1 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSW + +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL
Sbjct: 61 DTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G +A E I N+KRS +KY ARQ+ S+V + ++EQF G LLAC+
Sbjct: 121 LGRKKGAKLTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACV 175
Query: 547 SSRPGQVGRADGYILE 594
+SRPGQ GRADGYILE
Sbjct: 176 ASRPGQCGRADGYILE 191
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 245 bits (626), Expect = 7e-65
Identities = 124/196 (63%), Positives = 144/196 (73%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+D WHKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRL
Sbjct: 1 MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRL 59
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSW + +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+
Sbjct: 60 DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 119
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G +A EE + N+KRS KY+ARQ+ ++V ++EQFA G +LACI
Sbjct: 120 LGRKRGAKLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACI 174
Query: 547 SSRPGQVGRADGYILE 594
SSRPGQ GR DGYILE
Sbjct: 175 SSRPGQCGREDGYILE 190
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 238 bits (608), Expect = 8e-63
Identities = 118/196 (60%), Positives = 145/196 (73%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+DS HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
+ GNF+WA + V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+
Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+G ++ +E+ + +KRS ++KY RQK +V +++QF G +LACI
Sbjct: 121 LGRKRNPKHA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACI 177
Query: 547 SSRPGQVGRADGYILE 594
SSRPGQ GR+DGYILE
Sbjct: 178 SSRPGQCGRSDGYILE 193
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 234 bits (598), Expect = 1e-61
Identities = 118/196 (60%), Positives = 142/196 (72%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRL 186
MGIS+DSWHKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 187 DHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKE 366
D GNFSWA + +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 367 IGXXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 546
+ +A E++ I N+KRS ++KY RQK + V + EQF G LLA I
Sbjct: 121 LA-----RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARI 175
Query: 547 SSRPGQVGRADGYILE 594
SS PGQVG+A+GYILE
Sbjct: 176 SSSPGQVGQANGYILE 191
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 219 bits (558), Expect = 5e-57
Identities = 116/199 (58%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALR 183
MGIS+DS HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 184 LDHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLK 363
LD GN+SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 364 EIGXXXXXXXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLL 537
+IG + E+T K+S+ ++K E RQ+ + ++EQF G LL
Sbjct: 121 DIGRKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL 180
Query: 538 ACISSRPGQVGRADGYILE 594
ACISSRPGQ GRADGYILE
Sbjct: 181 ACISSRPGQCGRADGYILE 199
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 216 bits (551), Expect = 3e-56
Identities = 115/200 (57%), Positives = 140/200 (70%), Gaps = 4/200 (2%)
Frame = +1
Query: 7 MGISQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALR 183
MGIS+DS HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 184 LDHGNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLK 363
LD GN+SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 364 EIG---XXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSL 534
+IG +A + E+ K+S+ +K E R++ + ++EQF G L
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180
Query: 535 LACISSRPGQVGRADGYILE 594
LACISSRPGQ GRADGYILE
Sbjct: 181 LACISSRPGQCGRADGYILE 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,100,969
Number of Sequences: 369166
Number of extensions: 1120543
Number of successful extensions: 2741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2716
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)