Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E14
(615 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 243 2e-64
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 243 4e-64
sp|P62247|RS8_BRARE 40S ribosomal protein S8 239 3e-63
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 239 4e-63
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 231 9e-61
sp|O76756|RS8_APIME 40S ribosomal protein S8 226 4e-59
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 222 5e-58
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 214 2e-55
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 204 1e-52
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 204 2e-52
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 243 bits (621), Expect = 2e-64
Identities = 120/182 (65%), Positives = 139/182 (76%)
Frame = +1
Query: 13 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 192
HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDV 81
Query: 193 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 372
VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG-----RKKGAKLTPEEEDI 136
Query: 373 FNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELE 552
N+KRS +K++ RRK+S++S + EQF QG LLACISSRPGQ GRADGY+LE KELE
Sbjct: 137 LNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELE 196
Query: 553 FY 558
FY
Sbjct: 197 FY 198
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 243 bits (619), Expect = 4e-64
Identities = 119/182 (65%), Positives = 141/182 (77%)
Frame = +1
Query: 13 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 192
HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDV 81
Query: 193 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 372
VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG-----RKKGAKLTPEEEEI 136
Query: 373 FNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELE 552
N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SRPGQ GRADGY+LE KELE
Sbjct: 137 LNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELE 196
Query: 553 FY 558
FY
Sbjct: 197 FY 198
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 239 bits (611), Expect = 3e-63
Identities = 117/182 (64%), Positives = 138/182 (75%)
Frame = +1
Query: 13 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 192
HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDV 81
Query: 193 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 372
VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG-----RKKGAKLTPEEEEI 136
Query: 373 FNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELE 552
N+KRS +K+ RRK +++S ++EQF QG LLACISSRPGQ GRADGY+LE KELE
Sbjct: 137 LNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELE 196
Query: 553 FY 558
FY
Sbjct: 197 FY 198
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 239 bits (610), Expect = 4e-63
Identities = 118/182 (64%), Positives = 138/182 (75%)
Frame = +1
Query: 13 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 192
HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDV 81
Query: 193 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 372
VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG-----RKKGAKLTPEEEEI 136
Query: 373 FNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELE 552
N+KRS +KYE R+K +++S ++EQF QG LLACI+SRPGQ GRADGY+LE KELE
Sbjct: 137 LNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELE 196
Query: 553 FY 558
FY
Sbjct: 197 FY 198
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 231 bits (590), Expect = 9e-61
Identities = 117/181 (64%), Positives = 137/181 (75%)
Frame = +1
Query: 16 KKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDTV 195
KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW + +RK+RIID V
Sbjct: 23 KKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVV 82
Query: 196 YNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTIF 375
YNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G +A E I
Sbjct: 83 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA-----EDAII 137
Query: 376 NQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELEF 555
N+KRS +KY AR++ S+V + ++EQF G LLAC++SRPGQ GRADGYILE KELEF
Sbjct: 138 NKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEF 197
Query: 556 Y 558
Y
Sbjct: 198 Y 198
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 226 bits (576), Expect = 4e-59
Identities = 115/181 (63%), Positives = 134/181 (74%)
Frame = +1
Query: 16 KKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDTV 195
KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNFSW + +RK RIID V
Sbjct: 23 KKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNFSWGSECTTRKTRIIDVV 81
Query: 196 YNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTIF 375
YNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G +A EE +
Sbjct: 82 YNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEE-----VL 136
Query: 376 NQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELEF 555
N+KRS KY+AR++ ++V ++EQFA G +LACISSRPGQ GR DGYILE KELEF
Sbjct: 137 NKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEF 196
Query: 556 Y 558
Y
Sbjct: 197 Y 197
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 222 bits (566), Expect = 5e-58
Identities = 109/181 (60%), Positives = 135/181 (74%)
Frame = +1
Query: 16 KKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDTV 195
KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF+WA + V+RK RI D V
Sbjct: 23 KKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVV 82
Query: 196 YNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTIF 375
YNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G ++ +E+ +
Sbjct: 83 YNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHA---QKEDENDVL 139
Query: 376 NQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKELEF 555
+KRS ++KY R+K +V +++QF G +LACISSRPGQ GR+DGYILE KELEF
Sbjct: 140 TKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEF 199
Query: 556 Y 558
Y
Sbjct: 200 Y 200
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 214 bits (544), Expect = 2e-55
Identities = 108/183 (59%), Positives = 132/183 (72%)
Frame = +1
Query: 10 PHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIID 189
PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNFSWA + +RK RI+D
Sbjct: 21 PHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVD 80
Query: 190 TVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEEST 369
T+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY + +A E++
Sbjct: 81 TMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA-----RKKNAKLSEEDNA 135
Query: 370 IFNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKEL 549
I N+KRS ++KY R+K + V + EQF G LLA ISS PGQVG+A+GYILE KEL
Sbjct: 136 ILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKEL 195
Query: 550 EFY 558
+FY
Sbjct: 196 DFY 198
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 204 bits (520), Expect = 1e-52
Identities = 108/184 (58%), Positives = 130/184 (70%), Gaps = 3/184 (1%)
Frame = +1
Query: 16 KKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 192
KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW +AV+RK RI+D
Sbjct: 23 KKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDV 82
Query: 193 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDAN--EEPEES 366
VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG + E+
Sbjct: 83 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKEPPHPRGCCGQDAEA 142
Query: 367 TIFNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDKE 546
T K+S+ ++K E R++ + ++EQF G LLACISSRPGQ GRADGYILE KE
Sbjct: 143 TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKE 202
Query: 547 LEFY 558
LEFY
Sbjct: 203 LEFY 206
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 204 bits (518), Expect = 2e-52
Identities = 108/185 (58%), Positives = 130/185 (70%), Gaps = 4/185 (2%)
Frame = +1
Query: 16 KKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 192
KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW +AV+RK RI+D
Sbjct: 23 KKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDV 82
Query: 193 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG---XXXXXXXXDANEEPEE 363
VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG +A + E
Sbjct: 83 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVE 142
Query: 364 STIFNQKRSSSCLQKYEARRKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILEDK 543
+ K+S+ +K E R++ + ++EQF G LLACISSRPGQ GRADGYILE K
Sbjct: 143 AAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202
Query: 544 ELEFY 558
ELEFY
Sbjct: 203 ELEFY 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,212,788
Number of Sequences: 369166
Number of extensions: 967281
Number of successful extensions: 2175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)