Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_F09
(652 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 267 2e-71
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 266 5e-71
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 263 2e-70
sp|P62247|RS8_BRARE 40S ribosomal protein S8 262 7e-70
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 254 2e-67
sp|O76756|RS8_APIME 40S ribosomal protein S8 249 3e-66
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 239 5e-63
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 238 1e-62
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 219 6e-57
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 216 4e-56
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 267 bits (682), Expect = 2e-71
Identities = 134/210 (63%), Positives = 157/210 (74%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+D+WHKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD G
Sbjct: 4 SRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSW + +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G
Sbjct: 64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG- 122
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
A PEE I N+KRS +K++ R+K+S++S + EQF QG LLACISSR
Sbjct: 123 ----RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSR 178
Query: 542 PGQVGRADGYILEDKEWNSMLR-IKGKKSK 628
PGQ GRADGY+LE KE LR IK KK K
Sbjct: 179 PGQCGRADGYVLEGKELEFYLRKIKAKKGK 208
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 266 bits (679), Expect = 5e-71
Identities = 133/210 (63%), Positives = 159/210 (75%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+D+WHKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD G
Sbjct: 4 SRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSW + +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G
Sbjct: 64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG- 122
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
A PEE I N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SR
Sbjct: 123 ----RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASR 178
Query: 542 PGQVGRADGYILEDKEWNSMLR-IKGKKSK 628
PGQ GRADGY+LE KE LR IK +K K
Sbjct: 179 PGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 263 bits (673), Expect = 2e-70
Identities = 133/210 (63%), Positives = 156/210 (74%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+D+WHKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD G
Sbjct: 4 SRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSW + +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G
Sbjct: 64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG- 122
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
A PEE I N+KRS +KYE R+K +++S ++EQF QG LLACI+SR
Sbjct: 123 ----RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASR 178
Query: 542 PGQVGRADGYILEDKEWNSMLR-IKGKKSK 628
PGQ GRADGY+LE KE LR IK KK K
Sbjct: 179 PGQCGRADGYVLEGKELEFYLRKIKAKKGK 208
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 262 bits (669), Expect = 7e-70
Identities = 130/210 (61%), Positives = 156/210 (74%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+D+WHKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD G
Sbjct: 4 SRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSW + +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G
Sbjct: 64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG- 122
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
A PEE I N+KRS +K+ R+K +++S ++EQF QG LLACISSR
Sbjct: 123 ----RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSR 178
Query: 542 PGQVGRADGYILEDKEWNSMLR-IKGKKSK 628
PGQ GRADGY+LE KE LR IK KK K
Sbjct: 179 PGQCGRADGYVLEGKELEFYLRKIKAKKGK 208
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 254 bits (648), Expect = 2e-67
Identities = 131/210 (62%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+D WHKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD G
Sbjct: 4 SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSW + +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G
Sbjct: 64 NFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 123
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
+A E I N+KRS +KY ARQ+ S+V + ++EQF G LLAC++SR
Sbjct: 124 KKGAKLTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASR 178
Query: 542 PGQVGRADGYILEDKEWNSMLR-IKGKKSK 628
PGQ GRADGYILE KE LR IK K++K
Sbjct: 179 PGQCGRADGYILEGKELEFYLRKIKSKRAK 208
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 249 bits (637), Expect = 3e-66
Identities = 130/210 (61%), Positives = 151/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+D WHKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD G
Sbjct: 4 SRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTG 62
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSW + +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G
Sbjct: 63 NFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGR 122
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
+A EE + N+KRS KY+ARQ+ ++V ++EQFA G +LACISSR
Sbjct: 123 KRGAKLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSR 177
Query: 542 PGQVGRADGYILEDKEWN-SMLRIKGKKSK 628
PGQ GR DGYILE KE M RIK KK+K
Sbjct: 178 PGQCGREDGYILEGKELEFYMRRIKSKKAK 207
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 239 bits (610), Expect = 5e-63
Identities = 122/208 (58%), Positives = 150/208 (72%), Gaps = 1/208 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+DS HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ G
Sbjct: 4 SRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NF+WA + V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G
Sbjct: 64 NFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGR 123
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
++ +E+ + +KRS ++KY RQK +V +++QF G +LACISSR
Sbjct: 124 KRNPKHA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSR 180
Query: 542 PGQVGRADGYILEDKEWNSML-RIKGKK 622
PGQ GR+DGYILE KE L +IK KK
Sbjct: 181 PGQCGRSDGYILEGKELEFYLKKIKSKK 208
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 238 bits (607), Expect = 1e-62
Identities = 123/210 (58%), Positives = 150/210 (71%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHG 181
S+DSWHKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD G
Sbjct: 4 SRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSG 63
Query: 182 NFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGX 361
NFSWA + +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY +
Sbjct: 64 NFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA- 122
Query: 362 XXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 541
+A E++ I N+KRS ++KY RQK + V + EQF G LLA ISS
Sbjct: 123 ----RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSS 178
Query: 542 PGQVGRADGYILEDKEWNSMLR-IKGKKSK 628
PGQVG+A+GYILE KE + LR I+ KK+K
Sbjct: 179 PGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 219 bits (557), Expect = 6e-57
Identities = 119/213 (55%), Positives = 146/213 (68%), Gaps = 4/213 (1%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDH 178
S+DS HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD
Sbjct: 4 SRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDT 63
Query: 179 GNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG 358
GN+SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 64 GNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIG 123
Query: 359 XXXXXXXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACI 532
+ E+T K+S+ ++K E RQ+ + ++EQF G LLACI
Sbjct: 124 RKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACI 183
Query: 533 SSRPGQVGRADGYILEDKEWN-SMLRIKGKKSK 628
SSRPGQ GRADGYILE KE M +++ KK K
Sbjct: 184 SSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 216
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 216 bits (550), Expect = 4e-56
Identities = 118/214 (55%), Positives = 146/214 (68%), Gaps = 5/214 (2%)
Frame = +2
Query: 2 SQDSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDH 178
S+DS HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD
Sbjct: 4 SRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDT 63
Query: 179 GNFSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG 358
GN+SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 64 GNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIG 123
Query: 359 ---XXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLAC 529
+A + E+ K+S+ +K E R++ + ++EQF G LLAC
Sbjct: 124 RKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLAC 183
Query: 530 ISSRPGQVGRADGYILEDKEWN-SMLRIKGKKSK 628
ISSRPGQ GRADGYILE KE M +++ KK K
Sbjct: 184 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,806,324
Number of Sequences: 369166
Number of extensions: 1161333
Number of successful extensions: 2847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2822
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)