Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N09
(650 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 253 3e-67
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 253 3e-67
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 249 3e-66
sp|P62247|RS8_BRARE 40S ribosomal protein S8 248 1e-65
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 241 1e-63
sp|O76756|RS8_APIME 40S ribosomal protein S8 236 5e-62
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 228 8e-60
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 224 1e-58
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 209 5e-54
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 206 3e-53
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 253 bits (646), Expect = 3e-67
Identities = 123/190 (64%), Positives = 147/190 (77%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 182
+WHKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 183 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 362
W + +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG---- 122
Query: 363 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQ 542
A PEE I N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SRPGQ
Sbjct: 123 -RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQ 181
Query: 543 VGRADGYILE 572
GRADGY+LE
Sbjct: 182 CGRADGYVLE 191
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 253 bits (646), Expect = 3e-67
Identities = 123/190 (64%), Positives = 145/190 (76%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 182
+WHKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 183 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 362
W + +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG---- 122
Query: 363 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQ 542
A PEE I N+KRS +K++ R+K+S++S + EQF QG LLACISSRPGQ
Sbjct: 123 -RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQ 181
Query: 543 VGRADGYILE 572
GRADGY+LE
Sbjct: 182 CGRADGYVLE 191
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 249 bits (637), Expect = 3e-66
Identities = 122/190 (64%), Positives = 144/190 (75%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 182
+WHKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFS 66
Query: 183 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 362
W + +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG---- 122
Query: 363 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQ 542
A PEE I N+KRS +KYE R+K +++S ++EQF QG LLACI+SRPGQ
Sbjct: 123 -RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQ 181
Query: 543 VGRADGYILE 572
GRADGY+LE
Sbjct: 182 CGRADGYVLE 191
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 248 bits (633), Expect = 1e-65
Identities = 119/190 (62%), Positives = 144/190 (75%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 182
+WHKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFS
Sbjct: 7 NWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFS 66
Query: 183 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 362
W + +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG---- 122
Query: 363 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQ 542
A PEE I N+KRS +K+ R+K +++S ++EQF QG LLACISSRPGQ
Sbjct: 123 -RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQ 181
Query: 543 VGRADGYILE 572
GRADGY+LE
Sbjct: 182 CGRADGYVLE 191
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 241 bits (615), Expect = 1e-63
Identities = 121/189 (64%), Positives = 141/189 (74%)
Frame = +3
Query: 6 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 185
WHKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW
Sbjct: 8 WHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSW 67
Query: 186 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 365
+ +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G
Sbjct: 68 GSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA 127
Query: 366 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 545
+A E I N+KRS +KY ARQ+ S+V + ++EQF G LLAC++SRPGQ
Sbjct: 128 KLTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQC 182
Query: 546 GRADGYILE 572
GRADGYILE
Sbjct: 183 GRADGYILE 191
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 236 bits (601), Expect = 5e-62
Identities = 119/189 (62%), Positives = 138/189 (73%)
Frame = +3
Query: 6 WHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSW 185
WHKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNFSW
Sbjct: 8 WHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNFSW 66
Query: 186 AHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXX 365
+ +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G
Sbjct: 67 GSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGA 126
Query: 366 XXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQV 545
+A EE + N+KRS KY+ARQ+ ++V ++EQFA G +LACISSRPGQ
Sbjct: 127 KLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQC 181
Query: 546 GRADGYILE 572
GR DGYILE
Sbjct: 182 GREDGYILE 190
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 228 bits (582), Expect = 8e-60
Identities = 113/190 (59%), Positives = 139/190 (73%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 182
S HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF+
Sbjct: 7 SAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFA 66
Query: 183 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 362
WA + V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G
Sbjct: 67 WASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRN 126
Query: 363 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQ 542
++ +E+ + +KRS ++KY RQK +V +++QF G +LACISSRPGQ
Sbjct: 127 PKHA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQ 183
Query: 543 VGRADGYILE 572
GR+DGYILE
Sbjct: 184 CGRSDGYILE 193
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 224 bits (572), Expect = 1e-58
Identities = 113/190 (59%), Positives = 136/190 (71%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFS 182
SWHKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNFS
Sbjct: 7 SWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFS 66
Query: 183 WAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXX 362
WA + +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY +
Sbjct: 67 WASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA---- 122
Query: 363 XXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQ 542
+A E++ I N+KRS ++KY RQK + V + EQF G LLA ISS PGQ
Sbjct: 123 -RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQ 181
Query: 543 VGRADGYILE 572
VG+A+GYILE
Sbjct: 182 VGQANGYILE 191
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 209 bits (532), Expect = 5e-54
Identities = 111/193 (57%), Positives = 134/193 (69%), Gaps = 3/193 (1%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNF 179
S HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+
Sbjct: 7 SMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNY 66
Query: 180 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 359
SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 67 SWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKK 126
Query: 360 XXXXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSR 533
+ E+T K+S+ ++K E RQ+ + ++EQF G LLACISSR
Sbjct: 127 KEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSR 186
Query: 534 PGQVGRADGYILE 572
PGQ GRADGYILE
Sbjct: 187 PGQCGRADGYILE 199
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 206 bits (525), Expect = 3e-53
Identities = 110/194 (56%), Positives = 134/194 (69%), Gaps = 4/194 (2%)
Frame = +3
Query: 3 SWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNF 179
S HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+
Sbjct: 7 SMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNY 66
Query: 180 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG--- 350
SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 67 SWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKK 126
Query: 351 XXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISS 530
+A + E+ K+S+ +K E R++ + ++EQF G LLACISS
Sbjct: 127 KTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISS 186
Query: 531 RPGQVGRADGYILE 572
RPGQ GRADGYILE
Sbjct: 187 RPGQCGRADGYILE 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,925,944
Number of Sequences: 369166
Number of extensions: 1048796
Number of successful extensions: 2489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2464
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)