Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K06
(652 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 255 6e-68
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 255 6e-68
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 252 7e-67
sp|P62247|RS8_BRARE 40S ribosomal protein S8 250 2e-66
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 243 3e-64
sp|O76756|RS8_APIME 40S ribosomal protein S8 238 1e-62
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 231 2e-60
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 227 2e-59
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 211 1e-54
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 209 7e-54
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 255 bits (652), Expect = 6e-68
Identities = 124/191 (64%), Positives = 148/191 (77%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
D+WHKRRKTGG+R HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNF
Sbjct: 6 DNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SW + +RK RIID VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G
Sbjct: 66 SWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG--- 122
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
A PEE I N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SRPG
Sbjct: 123 --RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 542 QVGRADGYILE 574
Q GRADGY+LE
Sbjct: 181 QCGRADGYVLE 191
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 255 bits (652), Expect = 6e-68
Identities = 124/191 (64%), Positives = 146/191 (76%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
D+WHKRRKTGG+R HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNF
Sbjct: 6 DNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SW + +RK RIID VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G
Sbjct: 66 SWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG--- 122
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
A PEE I N+KRS +K++ R+K+S++S + EQF QG LLACISSRPG
Sbjct: 123 --RKKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPG 180
Query: 542 QVGRADGYILE 574
Q GRADGY+LE
Sbjct: 181 QCGRADGYVLE 191
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 252 bits (643), Expect = 7e-67
Identities = 123/191 (64%), Positives = 145/191 (75%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
D+WHKRRKTGG+R HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNF
Sbjct: 6 DNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SW + +RK RIID VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G
Sbjct: 66 SWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG--- 122
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
A PEE I N+KRS +KYE R+K +++S ++EQF QG LLACI+SRPG
Sbjct: 123 --RKKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPG 180
Query: 542 QVGRADGYILE 574
Q GRADGY+LE
Sbjct: 181 QCGRADGYVLE 191
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 250 bits (639), Expect = 2e-66
Identities = 120/191 (62%), Positives = 145/191 (75%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
D+WHKRR+TGG+R HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNF
Sbjct: 6 DNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SW + +RK RIID VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G
Sbjct: 66 SWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG--- 122
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
A PEE I N+KRS +K+ R+K +++S ++EQF QG LLACISSRPG
Sbjct: 123 --RKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPG 180
Query: 542 QVGRADGYILE 574
Q GRADGY+LE
Sbjct: 181 QCGRADGYVLE 191
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 243 bits (620), Expect = 3e-64
Identities = 122/191 (63%), Positives = 142/191 (74%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
D WHKRR TGG+R KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNF
Sbjct: 6 DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SW + +RK+RIID VYNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G
Sbjct: 66 SWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKK 125
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
+A E I N+KRS +KY ARQ+ S+V + ++EQF G LLAC++SRPG
Sbjct: 126 GAKLTEA-----EDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPG 180
Query: 542 QVGRADGYILE 574
Q GRADGYILE
Sbjct: 181 QCGRADGYILE 191
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 238 bits (606), Expect = 1e-62
Identities = 120/191 (62%), Positives = 139/191 (72%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
D WHKRR TGG+R KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNF
Sbjct: 6 DHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNF 64
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SW + +RK RIID VYNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G
Sbjct: 65 SWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKR 124
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
+A EE + N+KRS KY+ARQ+ ++V ++EQFA G +LACISSRPG
Sbjct: 125 GAKLTEAEEE-----VLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPG 179
Query: 542 QVGRADGYILE 574
Q GR DGYILE
Sbjct: 180 QCGREDGYILE 190
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 231 bits (588), Expect = 2e-60
Identities = 114/191 (59%), Positives = 140/191 (73%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
DS HKRR TGG+R KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF
Sbjct: 6 DSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
+WA + V+RK RI D VYNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G
Sbjct: 66 AWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKR 125
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
++ +E+ + +KRS ++KY RQK +V +++QF G +LACISSRPG
Sbjct: 126 NPKHA---QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPG 182
Query: 542 QVGRADGYILE 574
Q GR+DGYILE
Sbjct: 183 QCGRSDGYILE 193
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 227 bits (578), Expect = 2e-59
Identities = 114/191 (59%), Positives = 137/191 (71%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNF 181
DSWHKR KTG +P PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNF
Sbjct: 6 DSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNF 65
Query: 182 SWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXX 361
SWA + +RK RI+DT+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY +
Sbjct: 66 SWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA--- 122
Query: 362 XXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPG 541
+A E++ I N+KRS ++KY RQK + V + EQF G LLA ISS PG
Sbjct: 123 --RKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180
Query: 542 QVGRADGYILE 574
QVG+A+GYILE
Sbjct: 181 QVGQANGYILE 191
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 211 bits (538), Expect = 1e-54
Identities = 112/194 (57%), Positives = 135/194 (69%), Gaps = 3/194 (1%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGN 178
DS HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN
Sbjct: 6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGN 65
Query: 179 FSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXX 358
+SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 66 YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRK 125
Query: 359 XXXXXXDAN--EEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISS 532
+ E+T K+S+ ++K E RQ+ + ++EQF G LLACISS
Sbjct: 126 KKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISS 185
Query: 533 RPGQVGRADGYILE 574
RPGQ GRADGYILE
Sbjct: 186 RPGQCGRADGYILE 199
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 209 bits (531), Expect = 7e-54
Identities = 111/195 (56%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Frame = +2
Query: 2 DSWHKRRKTGGRRPQPHKKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGN 178
DS HKRR TGG++ KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN
Sbjct: 6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGN 65
Query: 179 FSWAHQAVSRKARIIDTVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG-- 352
+SW +AV+RK RI+D VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG
Sbjct: 66 YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRK 125
Query: 353 -XXXXXXXXDANEEPEESTIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACIS 529
+A + E+ K+S+ +K E R++ + ++EQF G LLACIS
Sbjct: 126 KKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACIS 185
Query: 530 SRPGQVGRADGYILE 574
SRPGQ GRADGYILE
Sbjct: 186 SRPGQCGRADGYILE 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,075,627
Number of Sequences: 369166
Number of extensions: 1049978
Number of successful extensions: 2533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)