Planarian EST Database

DrC_00821

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00821 TATCGAAATCTATATAAATCTTATATGAAAAATGTCTTGGGATGCTTGGGGTGCAAATTT AGATGGCTATATGGCATCAAGTTTTACTGAAATTAACAATATAACAATCGCTTCTTCTAA TGGTGCAGTATGCATAAGCAGAAGTAAAGAGGGACCTACTCCAGATGCAAATGAAATAGC TGCATTAGTTAAATACCTTACTTCGAAGCAAGGATCAGGCCTCACATACGGGGGACACAA GTTGATGTTTACTCGAGAAATTGAAGATTCAATTATGATTTTCAACATTATTGGAGCTAG TAAAGGAGCACTTGCATTGAGCAAAACTGCTAGCACCAATTTTGTTATTCTTGCTTGTGG AGCTGGTCCTGACAAAAATTCTCAAGCTGTAGGTGTTAACGCCGTTAAATGTGTCGAATT CCTAAACAAATCATTGTAATTGGCGTTTATTGAAAACAATTCATTAGGATTGTATTATTT TTCAATATTGATTTTGATACGAAAAACAAATTTAAAATATATTGTGGTTTTATATTTGTA TGTTTTTTATTTTAAATAGTATAGAAATAATAACTTTATAATTAGTAGTCAGTTTACATG ACTTTTATATACAAAGGTAAATTTTTTGATTTGAATCTGTTTAACAATTGAATGTTATTA GTAATTTTGTAATTAAAAGTGTCATCCAAAATAATGGAACTTGTTATTTTATCAATTAAT TTAAGTGGATGGGCTTTTAATGAGTTATTCGAAGTAAGGTGTGATCTCATTAAGTATTCA AATTTTGATATAACGTGTGATTGTAGAATTTGTAATCAATTTGCTTAGCGTGTTCTTCGA GAGCAAACATTATGTAATTTGTGTTATCTAATTCCGTGACAAATTTAGATATTAATCTTA TTTGATTAGTTTTATTCATTATGCAGTAATGCCACTGTACA

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00821
         (941 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32006|PROF1_STRPU  Profilin (SpCoel1)                          35   0.31 
sp|Q58347|PUR2_METJA  Phosphoribosylamine--glycine ligase (G...    32   3.4  
sp|Q01369|GBLP_NEUCR  Guanine nucleotide-binding protein bet...    30   9.9  
sp|Q94981|ARI1_DROME  Ariadne-1 protein (Ari-1)                    30   9.9

>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
          Length = 142

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
 Frame = +2

Query: 32  MSWDAWGANLDGYM--ASSFTEINNITIASSNGAVCISRSKEGPTPDAN--------EIA 181
           MSWD++  NL      AS  T  +   I   +G+   +     PT D +        E+A
Sbjct: 1   MSWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTM----PTSDTSNNLKLTPEEMA 56

Query: 182 ALVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALS-KTASTNF 343
            + K   SK       SG+   G K  F RE EDS +   ++G  KG  +L+ +++ T  
Sbjct: 57  NIAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLTLQSSKTAI 112

Query: 344 VILACGAGPDKN--SQAVGVNA 403
           VI  C  G  +   ++AVGV A
Sbjct: 113 VIGHCPEGGQQGNLNKAVGVIA 134

>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
           ribonucleotide synthetase) (Phosphoribosylglycinamide
           synthetase)
          Length = 444

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 186 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKLDAI*PSKFAPQ 46
           +A   FA  V P L ++   APL E +V LL  + + A+ P K A Q
Sbjct: 54  DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQ 100

>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
           (Cross-pathway control WD-repeat protein cpc-2)
          Length = 316

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 92  INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 265
           IN +TI S +G++C S  K+G T   D NE   L     + +   L +  ++        
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253

Query: 266 DSIMIFNIIGASK 304
            SI+IF++   SK
Sbjct: 254 SSIIIFDLEKKSK 266

>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
          Length = 503

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 313 CIEQNC*HQFCYSCLWSW 366
           C  QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,342,856
Number of Sequences: 369166
Number of extensions: 1733460
Number of successful extensions: 4207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4205
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00821

Planaria EST Database

DrC_00821

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail