Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_K01
(346 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32006|PROF1_STRPU Profilin (SpCoel1) 32 0.45
sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (G... 32 0.59
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 1.7
sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomer... 29 2.9
sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis... 28 5.0
sp|Q8FDW4|SAT_ECOL6 Serine protease sat precursor (Secreted... 28 5.0
sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis prote... 28 8.6
sp|O66913|GID_AQUAE tRNA uridine 5-carboxymethylaminomethyl... 28 8.6
sp|Q9GHE4|MATK_ALICA Maturase K (Intron maturase) 28 8.6
>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
Length = 142
Score = 32.0 bits (71), Expect = 0.45
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Frame = +1
Query: 22 MSWDAWGANLDGYM--ASSFTEINNITIASSNGAVCISRSKEGPTPDAN--------EIA 171
MSWD++ NL AS T + I +G+ + PT D + E+A
Sbjct: 1 MSWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTM----PTSDTSNNLKLTPEEMA 56
Query: 172 ALVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALSKTASTNFV 336
+ K SK SG+ G K F RE EDS + ++G KG +L+ +S +
Sbjct: 57 NIAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLTLQSSKTAI 112
Query: 337 IL 342
++
Sbjct: 113 VI 114
>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
ribonucleotide synthetase) (Phosphoribosylglycinamide
synthetase)
Length = 444
Score = 31.6 bits (70), Expect = 0.59
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 176 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKLDAI*PSKFAPQ 36
+A FA V P L ++ APL E +V LL + + A+ P K A Q
Sbjct: 54 DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQ 100
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 82 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 255
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 256 DSIMIFNIIGASK 294
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase)
(D3,D2-enoyl-CoA isomerase)
Length = 358
Score = 29.3 bits (64), Expect = 2.9
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = +1
Query: 4 LNLI*KMSWDAWGANLDGYMASSFTEINNITIASSNGAVCISRSKEGPTP---DANEIAA 174
L+ + K WDAW N G + N + + SS +S S E P+ A+E A
Sbjct: 50 LDFVNKAKWDAW--NALGSLPKETARQNYVDLVSS-----LSSSSEAPSQGKRGADEKAR 102
Query: 175 LVKYLTSKQGSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALSKTASTNFVILA 345
K + G+T K+ F R + + + F + + + K AST+ ++A
Sbjct: 103 ESKDILVTSEDGIT----KITFNRPTKKNAISFQMY---RDIILALKNASTDNTVMA 152
>sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis polyketide synthase (PKS)
Length = 2181
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 82 INNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQGSGLTY 219
INN + A N AV + ++ P P+ EIA Q S L+Y
Sbjct: 796 INNFSAAGGNTAVLV---EDAPVPELGEIAGSFGEAAGNQSSELSY 838
>sp|Q8FDW4|SAT_ECOL6 Serine protease sat precursor (Secreted autotransporter toxin sat)
Length = 1295
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 85 NNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQGSGLTYGGHKLMFTR--EIED 258
NNI +AS NG V +++ N+ A + + +K+G L GH FTR +D
Sbjct: 442 NNIYLASGNGKVILNKDNS----LGNDQYAGIFF--TKRGGTLDLNGHNQTFTRIAATDD 495
Query: 259 SIMIFNIIGASKGALALSKTAS 324
I N + LA++ S
Sbjct: 496 GTTITNSDTTKEAVLAINNEDS 517
>sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis protein PURH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 592
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 52 DGYMASSFTEINNITIASS--NGAVCISRSKEGPTPDANEIAALV-KYLTSKQGSGL 213
DG +A + E +TI S NG C+ + + PD NE+ L +L+ K+ +G+
Sbjct: 339 DGIIAPGYEE-EALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGV 394
>sp|O66913|GID_AQUAE tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
Length = 445
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 49 LDGYMASSFTEINNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQG 204
++GY+ASS T I +A N K P + ALV Y+ +K+G
Sbjct: 343 VEGYVASSATGI----LAGINAGRLARGEKPLKAPTETMLGALVNYIVTKEG 390
>sp|Q9GHE4|MATK_ALICA Maturase K (Intron maturase)
Length = 512
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 174 CSYFICIWSRSLFTSAYAYCTIRRSDCYIVNFSKT*CHIA 55
C +++ +S+ S Y +++ CY+VNF + CH +
Sbjct: 277 CIHYVRYQGKSILASKGTYLLMKKWKCYLVNFWE--CHFS 314
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,517,295
Number of Sequences: 369166
Number of extensions: 659665
Number of successful extensions: 1804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)