Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_I10
(884 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 8.9
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 8.9
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 8.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 35 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 208
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 209 DSIMIFNIIGASK 247
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 256 CIEQNC*HQFCYSCLWSW 309
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,146,468
Number of Sequences: 369166
Number of extensions: 1564897
Number of successful extensions: 3850
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3848
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)