Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_A17
(687 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32006|PROF1_STRPU Profilin (SpCoel1) 35 0.19
sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (G... 32 2.0
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 6.0
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 6.0
>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
Length = 142
Score = 35.0 bits (79), Expect = 0.19
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Frame = +2
Query: 32 MSWDAWGANLDGYM--ASSFTEINNITIASSNGAVCISRSKEGPTPDAN--------EIA 181
MSWD++ NL AS T + I +G+ + PT D + E+A
Sbjct: 1 MSWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTM----PTSDTSNNLKLTPEEMA 56
Query: 182 ALVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALS-KTASTNF 343
+ K SK SG+ G K F RE EDS + ++G KG +L+ +++ T
Sbjct: 57 NIAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLTLQSSKTAI 112
Query: 344 VILACGAGPDKN--SQAVGVNA 403
VI C G + ++AVGV A
Sbjct: 113 VIGHCPEGGQQGNLNKAVGVIA 134
>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
ribonucleotide synthetase) (Phosphoribosylglycinamide
synthetase)
Length = 444
Score = 31.6 bits (70), Expect = 2.0
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 186 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKLDAI*PSKFAPQ 46
+A FA V P L ++ APL E +V LL + + A+ P K A Q
Sbjct: 54 DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQ 100
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 6.0
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 92 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 265
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 266 DSIMIFNIIGASK 304
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 313 CIEQNC*HQFCYSCLWSW 366
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,421,077
Number of Sequences: 369166
Number of extensions: 1256484
Number of successful extensions: 3146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3143
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)