Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J12
(508 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (G... 32 0.65
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 3.2
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 3.2
sp|P54032|RS24_METJA 30S ribosomal protein S24e 29 5.5
sp|P32006|PROF1_STRPU Profilin (SpCoel1) 29 5.5
sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme (AARE) (... 29 7.2
sp|Q09891|ATCX_SCHPO Putative phospholipid transporting ATP... 28 9.4
sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis... 28 9.4
sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis prote... 28 9.4
sp|Q6GH45|MPRF_STAAR Probable lysylphosphatidylglycerol syn... 28 9.4
>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
ribonucleotide synthetase) (Phosphoribosylglycinamide
synthetase)
Length = 444
Score = 32.3 bits (72), Expect = 0.65
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 161 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKLDAI*PSKFAPQASPRAE 3
+A FA V P L ++ APL E +V LL + + A+ P K A Q E
Sbjct: 54 DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQIETNKE 106
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 3.2
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 67 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 240
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 241 DSIMIFNIIGASK 279
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 3.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 288 CIEQNC*HQFCYSCLWSW 341
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
>sp|P54032|RS24_METJA 30S ribosomal protein S24e
Length = 101
Score = 29.3 bits (64), Expect = 5.5
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -3
Query: 344 GPAPQARITKLVLAVLLNASAPLLAPIMLKIIIESSISR 228
GP P + KL LA +LNA+ LL I+ KI+ E+ + R
Sbjct: 27 GPTPTFKDVKLKLAAILNANKDLL--IVEKIVEEAGMQR 63
>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
Length = 142
Score = 29.3 bits (64), Expect = 5.5
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Frame = +1
Query: 19 AWGANLDGYMASS-----FTEINNITIASSNGAVCISRSKEGPTPDAN--------EIAA 159
+W + +D +A S T + I +G+ + PT D + E+A
Sbjct: 2 SWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTM----PTSDTSNNLKLTPEEMAN 57
Query: 160 LVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALS-KTASTNFV 321
+ K SK SG+ G K F RE EDS + ++G KG +L+ +++ T V
Sbjct: 58 IAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLTLQSSKTAIV 113
Query: 322 ILACGAGPDKN--SQAVGVNA 378
I C G + ++AVGV A
Sbjct: 114 IGHCPEGGQQGNLNKAVGVIA 134
>sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme (AARE) (Acyl-peptide hydrolase)
(APH) (Acylaminoacyl-peptidase)
Length = 732
Score = 28.9 bits (63), Expect = 7.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = -2
Query: 138 WSRSLFTSAYAYCTIRRSDCYIVNFSKT*CHI----AI*ICTP--SIPSCRI 1
W F YCT RRS Y V+ S C + ++ IC+P S CRI
Sbjct: 263 WWHEPFRLGIRYCTNRRSALYYVDLSGGKCELLSDGSLAICSPRLSPDQCRI 314
>sp|Q09891|ATCX_SCHPO Putative phospholipid transporting ATPase 1
Length = 1402
Score = 28.5 bits (62), Expect = 9.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +1
Query: 1 NSARGDAWGANLDGYMAS------SFTEINNITIASSNG 99
NSAR G LDG+ S SF INN+T A+ NG
Sbjct: 1146 NSARKIFIGYMLDGFYQSVICFFFSFLVINNVTTAAQNG 1184
>sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis polyketide synthase (PKS)
Length = 2181
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 67 INNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQGSGLTY 204
INN + A N AV + ++ P P+ EIA Q S L+Y
Sbjct: 796 INNFSAAGGNTAVLV---EDAPVPELGEIAGSFGEAAGNQSSELSY 838
>sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis protein PURH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 592
Score = 28.5 bits (62), Expect = 9.4
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +1
Query: 37 DGYMASSFTEINNITIASS--NGAVCISRSKEGPTPDANEIAALV-KYLTSKQGSGLTYG 207
DG +A + E +TI S NG C+ + + PD NE+ L +L+ K+ +G+
Sbjct: 339 DGIIAPGYEE-EALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVV-- 395
Query: 208 GHKLMFT------REIEDSIMIFNIIGASKGALALSKTASTNFVILACGAGPDKNSQAVG 369
K +F+ +++ +S + I+ A K +N V A KN Q +G
Sbjct: 396 -DKSLFSNVVTKNKDLPESALRDLIV-----ATIAVKYTQSNSVCYA------KNGQVIG 443
Query: 370 VNA 378
+ A
Sbjct: 444 IGA 446
>sp|Q6GH45|MPRF_STAAR Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 28.5 bits (62), Expect = 9.4
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +1
Query: 133 TPDANEIAALVKYLTSKQGSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALSKTAST 312
T D ++ + + +GL+ ++F + D+ +I N I + L
Sbjct: 120 THDKKKLVHFISLILISMLTGLSLLSLLIVF--HVFDASLILNKITWVRWVLYAVSLFLP 177
Query: 313 NFVILACGAGPDKNSQAVGV--NAVKCVEFLNKSL*LAF 423
F+I + PDKN++ VG+ V CVE+L ++ L F
Sbjct: 178 LFIIYSMVRPPDKNNRYVGLYCTLVSCVEWLAAAVVLYF 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,128,182
Number of Sequences: 369166
Number of extensions: 1004275
Number of successful extensions: 2682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2680
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)