Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D11
(528 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32006|PROF1_STRPU Profilin (SpCoel1) 35 0.11
sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (G... 32 1.2
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 3.6
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 3.6
sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomer... 29 6.1
sp|P54032|RS24_METJA 30S ribosomal protein S24e 29 6.1
>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
Length = 142
Score = 35.0 bits (79), Expect = 0.11
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Frame = +3
Query: 27 MSWDAWGANLDGYM--ASSFTEINNITIASSNGAVCISRSKEGPTPDAN--------EIA 176
MSWD++ NL AS T + I +G+ + PT D + E+A
Sbjct: 1 MSWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTM----PTSDTSNNLKLTPEEMA 56
Query: 177 ALVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALS-KTASTNF 338
+ K SK SG+ G K F RE EDS + ++G KG +L+ +++ T
Sbjct: 57 NIAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLTLQSSKTAI 112
Query: 339 VILACGAGPDKN--SQAVGVNA 398
VI C G + ++AVGV A
Sbjct: 113 VIGHCPEGGQQGNLNKAVGVIA 134
>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
ribonucleotide synthetase) (Phosphoribosylglycinamide
synthetase)
Length = 444
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 181 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKLDAI*PSKFAPQ 41
+A FA V P L ++ APL E +V LL + + A+ P K A Q
Sbjct: 54 DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQ 100
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 3.6
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 87 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 260
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 261 DSIMIFNIIGASK 299
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 3.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 308 CIEQNC*HQFCYSCLWSW 361
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
>sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase)
(D3,D2-enoyl-CoA isomerase)
Length = 358
Score = 29.3 bits (64), Expect = 6.1
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Frame = +3
Query: 9 INLI*KMSWDAWGANLDGYMASSFTEINNITIASSNGAVCISRSKEGPTP---DANEIAA 179
++ + K WDAW N G + N + + SS +S S E P+ A+E A
Sbjct: 50 LDFVNKAKWDAW--NALGSLPKETARQNYVDLVSS-----LSSSSEAPSQGKRGADEKAR 102
Query: 180 LVKYLTSKQGSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALSKTASTNFVILACGA 359
K + G+T K+ F R + + + F + + + K AST+ ++A
Sbjct: 103 ESKDILVTSEDGIT----KITFNRPTKKNAISFQMY---RDIILALKNASTDNTVMAVFT 155
Query: 360 G 362
G
Sbjct: 156 G 156
>sp|P54032|RS24_METJA 30S ribosomal protein S24e
Length = 101
Score = 29.3 bits (64), Expect = 6.1
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -3
Query: 364 GPAPQARITKLVLAVLLNASAPLLAPIMLKIIIESSISR 248
GP P + KL LA +LNA+ LL I+ KI+ E+ + R
Sbjct: 27 GPTPTFKDVKLKLAAILNANKDLL--IVEKIVEEAGMQR 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,523,412
Number of Sequences: 369166
Number of extensions: 1051044
Number of successful extensions: 2825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2823
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)