Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J17
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 1.7
sp|Q89VX1|MUTS_BRAJA DNA mismatch repair protein mutS 29 2.9
sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytosolic (DYHC) 28 4.9
sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor a... 28 6.5
sp|Q4V9P9|NOL11_BRARE Nucleolar protein 11-like 28 8.4
sp|P74421|PGK_SYNY3 Phosphoglycerate kinase 28 8.4
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 42 CIEQNC*HQFCYSCLWSW 95
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
>sp|Q89VX1|MUTS_BRAJA DNA mismatch repair protein mutS
Length = 912
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 200 NPNELFSINANYND--LFRNSTHLTALTPTA*EFLSGPAPQARITKLVLAVLLNASAPLL 27
NPNE +A YND L + L A+TP + G + R+ ++ A L
Sbjct: 199 NPNEAIVTDALYNDNELGQTLRELPAVTPLTRDVFDGATAEKRLCDYFAVATMDGLAQLT 258
Query: 26 KLQ 18
+L+
Sbjct: 259 RLE 261
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytosolic (DYHC)
Length = 4568
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 230 RIKINIEK*YNPNELFSINANYNDLF 153
R+K +E N NE+FSI + YN LF
Sbjct: 549 RLKSQLESSRNSNEMFSIFSRYNALF 574
>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein (GPI
anchor attachment protein 1) (GAA1 protein homolog)
(mGAA1)
Length = 621
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 34 GALALSKTASTNFVILACGAGPD-KNSQAVGV 126
G L ++AST ++L GPD NSQAVG+
Sbjct: 131 GILRAPRSASTESLVLTVPCGPDATNSQAVGL 162
>sp|Q4V9P9|NOL11_BRARE Nucleolar protein 11-like
Length = 708
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 85 CGAGPDKNSQAVGVNAVKCVEFLNKSL*LAFIENNSLGLYYFSI 216
CG GPDKNS + G+ ++ L K + + N+S + + +
Sbjct: 11 CGVGPDKNSSSSGILGIE----LGKDVDHIIVTNSSRAVTVYKV 50
>sp|P74421|PGK_SYNY3 Phosphoglycerate kinase
Length = 401
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +1
Query: 25 LSKGALALSKTASTNF-----VILACGAGPDKNSQAVGVNAV 135
L+K +A +K F V++A PD N+Q VGV+A+
Sbjct: 250 LAKSLMAKAKEKGVEFLLPTDVVVADNFAPDANAQTVGVDAI 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,549,222
Number of Sequences: 369166
Number of extensions: 395227
Number of successful extensions: 1007
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)