Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H04
(489 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (G... 32 1.0
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 3.0
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 3.0
sp|P54032|RS24_METJA 30S ribosomal protein S24e 29 5.1
sp|P32006|PROF1_STRPU Profilin (SpCoel1) 29 6.7
sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis... 28 8.8
sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis prote... 28 8.8
sp|Q6GH45|MPRF_STAAR Probable lysylphosphatidylglycerol syn... 28 8.8
sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytosolic (DYHC) 28 8.8
sp|Q8FDW4|SAT_ECOL6 Serine protease sat precursor (Secreted... 28 8.8
>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
ribonucleotide synthetase) (Phosphoribosylglycinamide
synthetase)
Length = 444
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 141 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKLDAI*PSKFAPQ 1
+A FA V P L ++ APL E +V LL + + A+ P K A Q
Sbjct: 54 DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQ 100
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 3.0
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 47 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 220
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 221 DSIMIFNIIGASK 259
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 268 CIEQNC*HQFCYSCLWSW 321
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
>sp|P54032|RS24_METJA 30S ribosomal protein S24e
Length = 101
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 324 GPAPQARITKLVLAVLLNASAPLLAPIMLKIIIESSISR 208
GP P + KL LA +LNA+ LL I+ KI+ E+ + R
Sbjct: 27 GPTPTFKDVKLKLAAILNANKDLL--IVEKIVEEAGMQR 63
>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
Length = 142
Score = 28.9 bits (63), Expect = 6.7
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 113 TPDANEIAALVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALS 277
TP+ E+A + K SK SG+ G K F RE EDS + ++G KG +L+
Sbjct: 51 TPE--EMANIAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLT 104
Query: 278 -KTASTNFVILACGAGPDKN--SQAVGVNA 358
+++ T VI C G + ++AVGV A
Sbjct: 105 LQSSKTAIVIGHCPEGGQQGNLNKAVGVIA 134
>sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis polyketide synthase (PKS)
Length = 2181
Score = 28.5 bits (62), Expect = 8.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 47 INNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQGSGLTY 184
INN + A N AV + ++ P P+ EIA Q S L+Y
Sbjct: 796 INNFSAAGGNTAVLV---EDAPVPELGEIAGSFGEAAGNQSSELSY 838
>sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis protein PURH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 592
Score = 28.5 bits (62), Expect = 8.8
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +2
Query: 17 DGYMASSFTEINNITIASS--NGAVCISRSKEGPTPDANEIAALV-KYLTSKQGSGLTYG 187
DG +A + E +TI S NG C+ + + PD NE+ L +L+ K+ +G+
Sbjct: 339 DGIIAPGYEE-EALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVV-- 395
Query: 188 GHKLMFT------REIEDSIMIFNIIGASKGALALSKTASTNFVILACGAGPDKNSQAVG 349
K +F+ +++ +S + I+ A K +N V A KN Q +G
Sbjct: 396 -DKSLFSNVVTKNKDLPESALRDLIV-----ATIAVKYTQSNSVCYA------KNGQVIG 443
Query: 350 VNA 358
+ A
Sbjct: 444 IGA 446
>sp|Q6GH45|MPRF_STAAR Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 28.5 bits (62), Expect = 8.8
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +2
Query: 113 TPDANEIAALVKYLTSKQGSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALSKTAST 292
T D ++ + + +GL+ ++F + D+ +I N I + L
Sbjct: 120 THDKKKLVHFISLILISMLTGLSLLSLLIVF--HVFDASLILNKITWVRWVLYAVSLFLP 177
Query: 293 NFVILACGAGPDKNSQAVGV--NAVKCVEFLNKSL*LAF 403
F+I + PDKN++ VG+ V CVE+L ++ L F
Sbjct: 178 LFIIYSMVRPPDKNNRYVGLYCTLVSCVEWLAAAVVLYF 216
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytosolic (DYHC)
Length = 4568
Score = 28.5 bits (62), Expect = 8.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 456 RIKINIEK*YNPNELFSINANYNDLF 379
R+K +E N NE+FSI + YN LF
Sbjct: 549 RLKSQLESSRNSNEMFSIFSRYNALF 574
>sp|Q8FDW4|SAT_ECOL6 Serine protease sat precursor (Secreted autotransporter toxin sat)
Length = 1295
Score = 28.5 bits (62), Expect = 8.8
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 50 NNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQGSGLTYGGHKLMFTR--EIED 223
NNI +AS NG V +++ N+ A + + +K+G L GH FTR +D
Sbjct: 442 NNIYLASGNGKVILNKDNS----LGNDQYAGIFF--TKRGGTLDLNGHNQTFTRIAATDD 495
Query: 224 SIMIFNIIGASKGALALSKTAS 289
I N + LA++ S
Sbjct: 496 GTTITNSDTTKEAVLAINNEDS 517
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,661,412
Number of Sequences: 369166
Number of extensions: 936541
Number of successful extensions: 2542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2540
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)