DrC_00786
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00786 (522 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 230 2e-60 sp|P50883|RL12_ARATH 60S ribosomal protein L12 224 7e-59 sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 221 6e-58 sp|P23358|RL12_RAT 60S ribosomal protein L12 219 2e-57 sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 219 3e-57 sp|P35979|RL12_MOUSE 60S ribosomal protein L12 219 4e-57 sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 211 6e-55 sp|O50003|RL12_PRUAR 60S ribosomal protein L12 211 8e-55 sp|O75000|RL12_SCHPO 60S ribosomal protein L12 211 1e-54 sp|P50884|RL12_CHLRE 60S ribosomal protein L12 201 7e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12 sp|P61866|RL12_CAEEL 60S ribosomal protein L12 Length = 165 Score = 230 bits (586), Expect = 2e-60 Identities = 110/162 (67%), Positives = 135/162 (83%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DPT I VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 KLTIQNR A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522 K L+ TVKEILGTA+S+GCTID + P DII + GE+ + Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12 Length = 166 Score = 224 bits (572), Expect = 7e-59 Identities = 107/163 (65%), Positives = 137/163 (84%), Gaps = 1/163 (0%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRIT 213 M PKLDP+ I VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+T Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60 Query: 214 VKLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPR 393 VKLT+QNRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPR Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120 Query: 394 SCGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522 S K L TV+EILGT S+GCT+D + P+DI ++ +GE+ + Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 Length = 165 Score = 221 bits (564), Expect = 6e-58 Identities = 106/158 (67%), Positives = 126/158 (79%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510 + L T+KEILGTA+S+GC +DN P DII +N G Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12 Length = 165 Score = 219 bits (559), Expect = 2e-57 Identities = 105/158 (66%), Positives = 126/158 (79%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510 + L T+KEILGTA+S+GC +D P DII +N G Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12 sp|P30050|RL12_HUMAN 60S ribosomal protein L12 Length = 165 Score = 219 bits (558), Expect = 3e-57 Identities = 105/158 (66%), Positives = 125/158 (79%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510 + L T+KEILGTA+S+GC +D P DII +N G Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12 Length = 165 Score = 219 bits (557), Expect = 4e-57 Identities = 104/158 (65%), Positives = 125/158 (79%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DP + VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV Sbjct: 1 MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510 + L T+KEILGTA+S+GC +D P DII +N G Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) Length = 165 Score = 211 bits (538), Expect = 6e-55 Identities = 101/162 (62%), Positives = 128/162 (79%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DP + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV Sbjct: 1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTV 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 +L IQNRQA SVVP+A+SL++ LKEP RDRKK KN+KH GN+ D +IEIA+ MR +S Sbjct: 61 QLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522 G+TL KEILGTA+S+GC +D + P DII +N GE+ + Sbjct: 121 FGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12 Length = 166 Score = 211 bits (537), Expect = 8e-55 Identities = 101/163 (61%), Positives = 132/163 (80%), Gaps = 1/163 (0%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRIT 213 M PK DP+ + VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+T Sbjct: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60 Query: 214 VKLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPR 393 VKLT+QNRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ R Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120 Query: 394 SCGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522 S K L TVKEIL T S+GCT+D + P+D+ ++ +G++ + Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12 Length = 165 Score = 211 bits (536), Expect = 1e-54 Identities = 98/162 (60%), Positives = 129/162 (79%) Frame = +1 Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216 M PK DP + +++R VGGEV ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TV Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60 Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396 KLTIQNRQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120 Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522 K L TVKEILGTA S+GCT+D + P D+ +++ GE+ + Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12 Length = 157 Score = 201 bits (512), Expect = 7e-52 Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%) Frame = +1 Query: 64 ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 240 + V +RV GGEVG +SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQ Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60 Query: 241 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 420 A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L + Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120 Query: 421 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522 KEILGTA S+GC +D + P+D+I+ +++G + + Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,735,760
Number of Sequences: 369166
Number of extensions: 1102864
Number of successful extensions: 3514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3488
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
