Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N01
(509 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 224 1e-58
sp|P50883|RL12_ARATH 60S ribosomal protein L12 218 5e-57
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 215 4e-56
sp|P23358|RL12_RAT 60S ribosomal protein L12 213 2e-55
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 213 2e-55
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 213 3e-55
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 205 4e-53
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 205 6e-53
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 204 7e-53
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 201 6e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 224 bits (570), Expect = 1e-58
Identities = 107/157 (68%), Positives = 132/157 (84%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DPT I VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T KLTIQ
Sbjct: 6 DPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCKLTIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NR A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS K L
Sbjct: 66 NRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 509
+ TVKEILGTA+S+GCTID + P DII + GE+ +
Sbjct: 126 EGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 218 bits (556), Expect = 5e-57
Identities = 104/159 (65%), Positives = 134/159 (84%), Gaps = 1/159 (0%)
Frame = +3
Query: 36 LDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLT 212
LDP+ I VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+TVKLT
Sbjct: 5 LDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLT 64
Query: 213 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 392
+QNRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPRS K
Sbjct: 65 VQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAK 124
Query: 393 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 509
L TV+EILGT S+GCT+D + P+DI ++ +GE+ +
Sbjct: 125 ELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 215 bits (548), Expect = 4e-56
Identities = 103/153 (67%), Positives = 123/153 (80%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQ
Sbjct: 6 DPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L
Sbjct: 66 NRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAREL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 497
T+KEILGTA+S+GC +DN P DII +N G
Sbjct: 126 SGTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 213 bits (543), Expect = 2e-55
Identities = 102/153 (66%), Positives = 123/153 (80%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQ
Sbjct: 6 DPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NRQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS + L
Sbjct: 66 NRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLAREL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 497
T+KEILGTA+S+GC +D P DII +N G
Sbjct: 126 SGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 213 bits (542), Expect = 2e-55
Identities = 102/153 (66%), Positives = 122/153 (79%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQ
Sbjct: 6 DPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L
Sbjct: 66 NRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAREL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 497
T+KEILGTA+S+GC +D P DII +N G
Sbjct: 126 SGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 213 bits (541), Expect = 3e-55
Identities = 101/153 (66%), Positives = 122/153 (79%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DP + VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQ
Sbjct: 6 DPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L
Sbjct: 66 NRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAREL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 497
T+KEILGTA+S+GC +D P DII +N G
Sbjct: 126 SGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 205 bits (522), Expect = 4e-53
Identities = 98/157 (62%), Positives = 125/157 (79%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DP + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV+L IQ
Sbjct: 6 DPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NRQA SVVP+A+SL++ LKEP RDRKK KN+KH GN+ D +IEIA+ MR +S G+TL
Sbjct: 66 NRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 509
KEILGTA+S+GC +D + P DII +N GE+ +
Sbjct: 126 ASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 205 bits (521), Expect = 6e-53
Identities = 98/158 (62%), Positives = 129/158 (81%), Gaps = 1/158 (0%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTI 215
DP+ + VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+TVKLT+
Sbjct: 6 DPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTV 65
Query: 216 QNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKT 395
QNRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ RS K
Sbjct: 66 QNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKE 125
Query: 396 LQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 509
L TVKEIL T S+GCT+D + P+D+ ++ +G++ +
Sbjct: 126 LAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 204 bits (520), Expect = 7e-53
Identities = 95/157 (60%), Positives = 126/157 (80%)
Frame = +3
Query: 39 DPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQ 218
DP + +++R VGGEV ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TVKLTIQ
Sbjct: 6 DPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQ 65
Query: 219 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 398
NRQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S K L
Sbjct: 66 NRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKEL 125
Query: 399 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 509
TVKEILGTA S+GCT+D + P D+ +++ GE+ +
Sbjct: 126 SGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 201 bits (512), Expect = 6e-52
Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Frame = +3
Query: 51 ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 227
+ V +RV GGEVG +SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 228 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 407
A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L +
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120
Query: 408 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 509
KEILGTA S+GC +D + P+D+I+ +++G + +
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,407,308
Number of Sequences: 369166
Number of extensions: 1099032
Number of successful extensions: 3488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)