Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G08
(484 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 228 4e-60
sp|P50883|RL12_ARATH 60S ribosomal protein L12 223 2e-58
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 220 2e-57
sp|P23358|RL12_RAT 60S ribosomal protein L12 218 6e-57
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 218 8e-57
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 217 1e-56
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 210 2e-54
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 209 2e-54
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 209 3e-54
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 201 6e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 228 bits (582), Expect = 4e-60
Identities = 109/160 (68%), Positives = 134/160 (83%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DPT I VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T KL
Sbjct: 3 PKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCKL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
TIQNR A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS
Sbjct: 63 TIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMA 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 484
K L+ TVKEILGTA+S+GCTID + P DII + GE+ +
Sbjct: 123 KKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 223 bits (568), Expect = 2e-58
Identities = 106/161 (65%), Positives = 136/161 (84%), Gaps = 1/161 (0%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVK 181
PKLDP+ I VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+TVK
Sbjct: 3 PKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVK 62
Query: 182 LTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSC 361
LT+QNRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPRS
Sbjct: 63 LTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSI 122
Query: 362 GKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 484
K L TV+EILGT S+GCT+D + P+DI ++ +GE+ +
Sbjct: 123 AKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 220 bits (560), Expect = 2e-57
Identities = 105/156 (67%), Positives = 125/156 (80%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKL
Sbjct: 3 PKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
TIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 63 TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLA 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 472
+ L T+KEILGTA+S+GC +DN P DII +N G
Sbjct: 123 RELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 218 bits (555), Expect = 6e-57
Identities = 104/156 (66%), Positives = 125/156 (80%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKL
Sbjct: 3 PKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
TIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS
Sbjct: 63 TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLA 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 472
+ L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 123 RELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 218 bits (554), Expect = 8e-57
Identities = 104/156 (66%), Positives = 124/156 (79%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKL
Sbjct: 3 PKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
TIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 63 TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLA 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 472
+ L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 123 RELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 217 bits (553), Expect = 1e-56
Identities = 103/156 (66%), Positives = 124/156 (79%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DP + VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKL
Sbjct: 3 PKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
TIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 63 TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLA 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 472
+ L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 123 RELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 210 bits (534), Expect = 2e-54
Identities = 100/160 (62%), Positives = 127/160 (79%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DP + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV+L
Sbjct: 3 PKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
IQNRQA SVVP+A+SL++ LKEP RDRKK KN+KH GN+ D +IEIA+ MR +S G
Sbjct: 63 KIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFG 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 484
+TL KEILGTA+S+GC +D + P DII +N GE+ +
Sbjct: 123 RTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 209 bits (533), Expect = 2e-54
Identities = 100/161 (62%), Positives = 131/161 (81%), Gaps = 1/161 (0%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVK 181
PK DP+ + VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+TVK
Sbjct: 3 PKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVK 62
Query: 182 LTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSC 361
LT+QNRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ RS
Sbjct: 63 LTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSM 122
Query: 362 GKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 484
K L TVKEIL T S+GCT+D + P+D+ ++ +G++ +
Sbjct: 123 AKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 209 bits (532), Expect = 3e-54
Identities = 97/160 (60%), Positives = 128/160 (80%)
Frame = +2
Query: 5 PKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKL 184
PK DP + +++R VGGEV ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TVKL
Sbjct: 3 PKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKL 62
Query: 185 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 364
TIQNRQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S
Sbjct: 63 TIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLA 122
Query: 365 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 484
K L TVKEILGTA S+GCT+D + P D+ +++ GE+ +
Sbjct: 123 KELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 201 bits (512), Expect = 6e-52
Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Frame = +2
Query: 26 ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 202
+ V +RV GGEVG +SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 203 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 382
A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L +
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120
Query: 383 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 484
KEILGTA S+GC +D + P+D+I+ +++G + +
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,235,469
Number of Sequences: 369166
Number of extensions: 1040253
Number of successful extensions: 3462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3436
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)