Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F19
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 230 2e-60
sp|P50883|RL12_ARATH 60S ribosomal protein L12 224 7e-59
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 221 6e-58
sp|P23358|RL12_RAT 60S ribosomal protein L12 219 2e-57
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 219 3e-57
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 219 4e-57
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 211 6e-55
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 211 8e-55
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 211 1e-54
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 201 7e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 230 bits (586), Expect = 2e-60
Identities = 110/162 (67%), Positives = 135/162 (83%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DPT I VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
KLTIQNR A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522
K L+ TVKEILGTA+S+GCTID + P DII + GE+ +
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 224 bits (572), Expect = 7e-59
Identities = 107/163 (65%), Positives = 137/163 (84%), Gaps = 1/163 (0%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRIT 213
M PKLDP+ I VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 214 VKLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPR 393
VKLT+QNRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPR
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 394 SCGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522
S K L TV+EILGT S+GCT+D + P+DI ++ +GE+ +
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 221 bits (564), Expect = 6e-58
Identities = 106/158 (67%), Positives = 126/158 (79%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510
+ L T+KEILGTA+S+GC +DN P DII +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 219 bits (559), Expect = 2e-57
Identities = 105/158 (66%), Positives = 126/158 (79%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510
+ L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 219 bits (558), Expect = 3e-57
Identities = 105/158 (66%), Positives = 125/158 (79%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510
+ L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 219 bits (557), Expect = 4e-57
Identities = 104/158 (65%), Positives = 125/158 (79%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DP + VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1 MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 510
+ L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 211 bits (538), Expect = 6e-55
Identities = 101/162 (62%), Positives = 128/162 (79%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DP + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV
Sbjct: 1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTV 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
+L IQNRQA SVVP+A+SL++ LKEP RDRKK KN+KH GN+ D +IEIA+ MR +S
Sbjct: 61 QLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522
G+TL KEILGTA+S+GC +D + P DII +N GE+ +
Sbjct: 121 FGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 211 bits (537), Expect = 8e-55
Identities = 101/163 (61%), Positives = 132/163 (80%), Gaps = 1/163 (0%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRIT 213
M PK DP+ + VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+T
Sbjct: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60
Query: 214 VKLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPR 393
VKLT+QNRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120
Query: 394 SCGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522
S K L TVKEIL T S+GCT+D + P+D+ ++ +G++ +
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 211 bits (536), Expect = 1e-54
Identities = 98/162 (60%), Positives = 129/162 (79%)
Frame = +1
Query: 37 MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 216
M PK DP + +++R VGGEV ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 217 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 396
KLTIQNRQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 397 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522
K L TVKEILGTA S+GCT+D + P D+ +++ GE+ +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 201 bits (512), Expect = 7e-52
Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Frame = +1
Query: 64 ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 240
+ V +RV GGEVG +SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 241 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 420
A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L +
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120
Query: 421 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 522
KEILGTA S+GC +D + P+D+I+ +++G + +
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,735,760
Number of Sequences: 369166
Number of extensions: 1102864
Number of successful extensions: 3514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3488
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)