Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_C04
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 221 5e-58
sp|P50883|RL12_ARATH 60S ribosomal protein L12 214 6e-56
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 213 2e-55
sp|P23358|RL12_RAT 60S ribosomal protein L12 211 7e-55
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 211 9e-55
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 210 1e-54
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 203 2e-52
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 202 2e-52
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 202 3e-52
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 201 5e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 221 bits (564), Expect = 5e-58
Identities = 106/156 (67%), Positives = 131/156 (83%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
PT I VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T KLTIQN
Sbjct: 7 PTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCKLTIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
R A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS K L+
Sbjct: 67 RVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLE 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 468
TVKEILGTA+S+GCTID + P DII + GE+ +
Sbjct: 127 GTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 214 bits (546), Expect = 6e-56
Identities = 102/157 (64%), Positives = 132/157 (84%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQ 177
P+ I VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+TVKLT+Q
Sbjct: 7 PSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQ 66
Query: 178 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 357
NRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPRS K L
Sbjct: 67 NRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKEL 126
Query: 358 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 468
TV+EILGT S+GCT+D + P+DI ++ +GE+ +
Sbjct: 127 SGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 213 bits (542), Expect = 2e-55
Identities = 102/152 (67%), Positives = 122/152 (80%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
P I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQN
Sbjct: 7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
RQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L
Sbjct: 67 RQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELS 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 456
T+KEILGTA+S+GC +DN P DII +N G
Sbjct: 127 GTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 211 bits (537), Expect = 7e-55
Identities = 101/152 (66%), Positives = 122/152 (80%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
P I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQN
Sbjct: 7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
RQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS + L
Sbjct: 67 RQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELS 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 456
T+KEILGTA+S+GC +D P DII +N G
Sbjct: 127 GTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 211 bits (536), Expect = 9e-55
Identities = 101/152 (66%), Positives = 121/152 (79%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
P I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQN
Sbjct: 7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
RQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L
Sbjct: 67 RQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELS 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 456
T+KEILGTA+S+GC +D P DII +N G
Sbjct: 127 GTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 210 bits (535), Expect = 1e-54
Identities = 100/152 (65%), Positives = 121/152 (79%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
P + VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQN
Sbjct: 7 PNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
RQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L
Sbjct: 67 RQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELS 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 456
T+KEILGTA+S+GC +D P DII +N G
Sbjct: 127 GTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 203 bits (516), Expect = 2e-52
Identities = 97/156 (62%), Positives = 124/156 (79%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
P + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV+L IQN
Sbjct: 7 PNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
RQA SVVP+A+SL++ LKEP RDRKK KN+KH GN+ D +IEIA+ MR +S G+TL
Sbjct: 67 RQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLA 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 468
KEILGTA+S+GC +D + P DII +N GE+ +
Sbjct: 127 SVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 202 bits (515), Expect = 2e-52
Identities = 97/157 (61%), Positives = 128/157 (81%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQ 177
P+ + VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+TVKLT+Q
Sbjct: 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQ 66
Query: 178 NRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTL 357
NRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ RS K L
Sbjct: 67 NRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKEL 126
Query: 358 QDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 468
TVKEIL T S+GCT+D + P+D+ ++ +G++ +
Sbjct: 127 AGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 202 bits (514), Expect = 3e-52
Identities = 94/156 (60%), Positives = 125/156 (80%)
Frame = +1
Query: 1 PTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQN 180
P + +++R VGGEV ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TVKLTIQN
Sbjct: 7 PNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQN 66
Query: 181 RQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQ 360
RQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S K L
Sbjct: 67 RQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELS 126
Query: 361 DTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 468
TVKEILGTA S+GCT+D + P D+ +++ GE+ +
Sbjct: 127 GTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 201 bits (512), Expect = 5e-52
Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Frame = +1
Query: 10 ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 186
+ V +RV GGEVG +SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 187 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 366
A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L +
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120
Query: 367 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 468
KEILGTA S+GC +D + P+D+I+ +++G + +
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,600,445
Number of Sequences: 369166
Number of extensions: 1004883
Number of successful extensions: 2510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2484
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)