Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D24
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 196 2e-50
sp|P50883|RL12_ARATH 60S ribosomal protein L12 191 4e-49
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 191 6e-49
sp|P23358|RL12_RAT 60S ribosomal protein L12 189 2e-48
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 188 3e-48
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 188 3e-48
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 187 9e-48
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 186 1e-47
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 180 1e-45
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 178 4e-45
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 196 bits (497), Expect = 2e-50
Identities = 92/137 (67%), Positives = 117/137 (85%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T KLTIQNR A+I VVP+AASL+VKEL
Sbjct: 26 SALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKEL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS K L+ TVKEILGTA+S+GCTID
Sbjct: 86 KEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDG 145
Query: 361 EPPQDIIAKLNEGELTV 411
+ P DII + GE+ +
Sbjct: 146 QHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 191 bits (486), Expect = 4e-49
Identities = 90/138 (65%), Positives = 118/138 (85%), Gaps = 1/138 (0%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQAEISVVPNAASLLVKE 177
+SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+TVKLT+QNRQA+++VVP+AA+L++K
Sbjct: 26 SSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKA 85
Query: 178 LKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTID 357
LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPRS K L TV+EILGT S+GCT+D
Sbjct: 86 LKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVD 145
Query: 358 NEPPQDIIAKLNEGELTV 411
+ P+DI ++ +GE+ +
Sbjct: 146 GKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 191 bits (484), Expect = 6e-49
Identities = 90/133 (67%), Positives = 110/133 (82%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K L
Sbjct: 26 SALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKAL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +DN
Sbjct: 86 KEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDN 145
Query: 361 EPPQDIIAKLNEG 399
P DII +N G
Sbjct: 146 RHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 189 bits (479), Expect = 2e-48
Identities = 89/133 (66%), Positives = 110/133 (82%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K L
Sbjct: 26 SALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKAL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +D
Sbjct: 86 KEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDG 145
Query: 361 EPPQDIIAKLNEG 399
P DII +N G
Sbjct: 146 RHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 188 bits (478), Expect = 3e-48
Identities = 89/133 (66%), Positives = 109/133 (81%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K L
Sbjct: 26 SALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKAL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +D
Sbjct: 86 KEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDG 145
Query: 361 EPPQDIIAKLNEG 399
P DII +N G
Sbjct: 146 RHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 188 bits (478), Expect = 3e-48
Identities = 89/133 (66%), Positives = 109/133 (81%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K L
Sbjct: 26 SALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKAL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEP RDRKK KNIKH GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +D
Sbjct: 86 KEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDG 145
Query: 361 EPPQDIIAKLNEG 399
P DII +N G
Sbjct: 146 RHPHDIIDDINSG 158
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 187 bits (474), Expect = 9e-48
Identities = 88/138 (63%), Positives = 116/138 (84%), Gaps = 1/138 (0%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQAEISVVPNAASLLVKE 177
+SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQA+ISV+P+AA+L++K
Sbjct: 17 SSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKA 76
Query: 178 LKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTID 357
LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L + KEILGTA S+GC +D
Sbjct: 77 LKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVD 136
Query: 358 NEPPQDIIAKLNEGELTV 411
+ P+D+I+ +++G + +
Sbjct: 137 GKDPRDVISAIDDGAIEI 154
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 186 bits (473), Expect = 1e-47
Identities = 87/137 (63%), Positives = 114/137 (83%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TVKLTIQNRQA +SVVP+A++L++K L
Sbjct: 26 STLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKAL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEPARDRKK KN+ H GNV+ D +IE+A+ MR +S K L TVKEILGTA S+GCT+D
Sbjct: 86 KEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDG 145
Query: 361 EPPQDIIAKLNEGELTV 411
+ P D+ +++ GE+ +
Sbjct: 146 KNPHDVQKEIDNGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 180 bits (456), Expect = 1e-45
Identities = 86/138 (62%), Positives = 114/138 (82%), Gaps = 1/138 (0%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQAEISVVPNAASLLVKE 177
+SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+TVKLT+QNRQA++SVVP+AA+L++K
Sbjct: 26 SSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKA 85
Query: 178 LKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTID 357
LKEP RDRKK KNIKH G+++ D VIEIAKIM+ RS K L TVKEIL T S+GCT+D
Sbjct: 86 LKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVD 145
Query: 358 NEPPQDIIAKLNEGELTV 411
+ P+D+ ++ +G++ +
Sbjct: 146 GKDPKDLQQEIADGDVEI 163
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 178 bits (451), Expect = 4e-45
Identities = 85/137 (62%), Positives = 110/137 (80%)
Frame = +1
Query: 1 ASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKEL 180
A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV+L IQNRQA SVVP+A+SL++ L
Sbjct: 26 AALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQNRQAAASVVPSASSLVITAL 85
Query: 181 KEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDN 360
KEP RDRKK KN+KH GN+ D +IEIA+ MR +S G+TL KEILGTA+S+GC +D
Sbjct: 86 KEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDF 145
Query: 361 EPPQDIIAKLNEGELTV 411
+ P DII +N GE+ +
Sbjct: 146 KNPHDIIEGINAGEIEI 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,571,874
Number of Sequences: 369166
Number of extensions: 921694
Number of successful extensions: 2236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)