Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I17
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 224 8e-59
sp|P50883|RL12_ARATH 60S ribosomal protein L12 219 3e-57
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 216 3e-56
sp|P23358|RL12_RAT 60S ribosomal protein L12 214 1e-55
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 213 1e-55
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 213 2e-55
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 206 3e-53
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 205 4e-53
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 205 5e-53
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 201 6e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 224 bits (571), Expect = 8e-59
Identities = 107/159 (67%), Positives = 133/159 (83%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DPT I VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T KLT
Sbjct: 4 KFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCKLT 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNR A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++ D +I+IA+IMRPRS K
Sbjct: 64 IQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAK 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 482
L+ TVKEILGTA+S+GCTID + P DII + GE+ +
Sbjct: 124 KLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 219 bits (557), Expect = 3e-57
Identities = 104/160 (65%), Positives = 135/160 (84%), Gaps = 1/160 (0%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKL 182
+LDP+ I VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T EWKGLR+TVKL
Sbjct: 4 KLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKL 63
Query: 183 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 362
T+QNRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPRS
Sbjct: 64 TVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIA 123
Query: 363 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 482
K L TV+EILGT S+GCT+D + P+DI ++ +GE+ +
Sbjct: 124 KELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 216 bits (549), Expect = 3e-56
Identities = 103/155 (66%), Positives = 124/155 (80%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLT
Sbjct: 4 KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLT 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS +
Sbjct: 64 IQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAR 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 470
L T+KEILGTA+S+GC +DN P DII +N G
Sbjct: 124 ELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 214 bits (544), Expect = 1e-55
Identities = 102/155 (65%), Positives = 124/155 (80%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLT
Sbjct: 4 KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLT 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS +
Sbjct: 64 IQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLAR 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 470
L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 124 ELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 213 bits (543), Expect = 1e-55
Identities = 102/155 (65%), Positives = 123/155 (79%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DP I VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLT
Sbjct: 4 KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLT 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS +
Sbjct: 64 IQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAR 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 470
L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 124 ELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 213 bits (542), Expect = 2e-55
Identities = 101/155 (65%), Positives = 123/155 (79%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DP + VYLR GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITVKLT
Sbjct: 4 KFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLT 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS +
Sbjct: 64 IQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAR 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 470
L T+KEILGTA+S+GC +D P DII +N G
Sbjct: 124 ELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 206 bits (523), Expect = 3e-53
Identities = 98/159 (61%), Positives = 126/159 (79%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DP + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV+L
Sbjct: 4 KFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLK 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNRQA SVVP+A+SL++ LKEP RDRKK KN+KH GN+ D +IEIA+ MR +S G+
Sbjct: 64 IQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGR 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 482
TL KEILGTA+S+GC +D + P DII +N GE+ +
Sbjct: 124 TLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 205 bits (522), Expect = 4e-53
Identities = 98/160 (61%), Positives = 130/160 (81%), Gaps = 1/160 (0%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKL 182
+ DP+ + VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T +WKGLR+TVKL
Sbjct: 4 KFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKL 63
Query: 183 TIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCG 362
T+QNRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ RS
Sbjct: 64 TVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMA 123
Query: 363 KTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 482
K L TVKEIL T S+GCT+D + P+D+ ++ +G++ +
Sbjct: 124 KELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 205 bits (521), Expect = 5e-53
Identities = 95/159 (59%), Positives = 127/159 (79%)
Frame = +3
Query: 6 ELDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITVKLT 185
+ DP + +++R VGGEV ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TVKLT
Sbjct: 4 KFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLT 63
Query: 186 IQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGK 365
IQNRQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S K
Sbjct: 64 IQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAK 123
Query: 366 TLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 482
L TVKEILGTA S+GCT+D + P D+ +++ GE+ +
Sbjct: 124 ELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 201 bits (512), Expect = 6e-52
Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Frame = +3
Query: 24 ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 200
+ V +RV GGEVG +SLAPK+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 201 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 380
A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V +IEIA++MRPRSC K L +
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120
Query: 381 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 482
KEILGTA S+GC +D + P+D+I+ +++G + +
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,773,518
Number of Sequences: 369166
Number of extensions: 1031073
Number of successful extensions: 3436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3410
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)