Planarian EST Database


Dr_sW_004_O22

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_004_O22
         (513 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P61865|RL12_CAEBR  60S ribosomal protein L12 >gi|48429087...   230   2e-60
sp|P50883|RL12_ARATH  60S ribosomal protein L12                   224   7e-59
sp|Q6QMZ7|RL12_CHILA  60S ribosomal protein L12                   221   6e-58
sp|P23358|RL12_RAT  60S ribosomal protein L12                     219   2e-57
sp|P61284|RL12_BOVIN  60S ribosomal protein L12 >gi|266921|s...   219   3e-57
sp|P35979|RL12_MOUSE  60S ribosomal protein L12                   219   4e-57
sp|P17079|RL12_YEAST  60S ribosomal protein L12 (L15) (YL23)      211   6e-55
sp|O50003|RL12_PRUAR  60S ribosomal protein L12                   211   8e-55
sp|O75000|RL12_SCHPO  60S ribosomal protein L12                   211   1e-54
sp|P50884|RL12_CHLRE  60S ribosomal protein L12                   201   6e-52
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
 sp|P61866|RL12_CAEEL 60S ribosomal protein L12
          Length = 165

 Score =  230 bits (586), Expect = 2e-60
 Identities = 110/162 (67%), Positives = 135/162 (83%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DPT I  VYLR VGGEVGA ++LAPK+GPLGLSPKK+G+DIAKAT +WKGL++T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           KLTIQNR A+I VVP+AASL+VKELKEP RDRKKVKN+KH+G++  D +I+IA+IMRPRS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 513
             K L+ TVKEILGTA+S+GCTID + P DII  +  GE+ +
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
          Length = 166

 Score =  224 bits (572), Expect = 7e-59
 Identities = 107/163 (65%), Positives = 137/163 (84%), Gaps = 1/163 (0%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRIT 204
           M PKLDP+ I  VY+RV GGEVGA +SLAPK+GPLGL+PKK+G+DIAK T  EWKGLR+T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 205 VKLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPR 384
           VKLT+QNRQA+++VVP+AA+L++K LKEP RDRKKVKNIKH+GN++FD V EIA+IMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 385 SCGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 513
           S  K L  TV+EILGT  S+GCT+D + P+DI  ++ +GE+ +
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
          Length = 165

 Score =  221 bits (564), Expect = 6e-58
 Identities = 106/158 (67%), Positives = 126/158 (79%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DP  I  VYLR  GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1   MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 61  KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 501
             + L  T+KEILGTA+S+GC +DN  P DII  +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNG 158
>sp|P23358|RL12_RAT 60S ribosomal protein L12
          Length = 165

 Score =  219 bits (559), Expect = 2e-57
 Identities = 105/158 (66%), Positives = 126/158 (79%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DP  I  VYLR  GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1   MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH+GN+ FD ++ IA+ MR RS
Sbjct: 61  KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 501
             + L  T+KEILGTA+S+GC +D   P DII  +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
 sp|P30050|RL12_HUMAN 60S ribosomal protein L12
          Length = 165

 Score =  219 bits (558), Expect = 3e-57
 Identities = 105/158 (66%), Positives = 125/158 (79%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DP  I  VYLR  GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1   MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 61  KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 501
             + L  T+KEILGTA+S+GC +D   P DII  +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
          Length = 165

 Score =  219 bits (557), Expect = 4e-57
 Identities = 104/158 (65%), Positives = 125/158 (79%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DP  +  VYLR  GGEVGA ++LAPK+GPLGLSPKKVGDDIAKAT +WKGLRITV
Sbjct: 1   MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           KLTIQNRQA+I VVP+A++L++K LKEP RDRKK KNIKH GN+ FD ++ IA+ MR RS
Sbjct: 61  KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEG 501
             + L  T+KEILGTA+S+GC +D   P DII  +N G
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG 158
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
          Length = 165

 Score =  211 bits (538), Expect = 6e-55
 Identities = 101/162 (62%), Positives = 128/162 (79%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DP  + Y+YLR VGGEVGA A+LAPK+GPLGLSPKKVG+DIAKAT E+KG+++TV
Sbjct: 1   MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTV 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           +L IQNRQA  SVVP+A+SL++  LKEP RDRKK KN+KH GN+  D +IEIA+ MR +S
Sbjct: 61  QLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 513
            G+TL    KEILGTA+S+GC +D + P DII  +N GE+ +
Sbjct: 121 FGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEI 162
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
          Length = 166

 Score =  211 bits (537), Expect = 8e-55
 Identities = 101/163 (61%), Positives = 132/163 (80%), Gaps = 1/163 (0%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRIT 204
           M PK DP+ +  VY+RV GGEVGA +SLAPK+GPLGLSPKK+G+DIAK T  +WKGLR+T
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 205 VKLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPR 384
           VKLT+QNRQA++SVVP+AA+L++K LKEP RDRKK KNIKH G+++ D VIEIAKIM+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 385 SCGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 513
           S  K L  TVKEIL T  S+GCT+D + P+D+  ++ +G++ +
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEI 163
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
          Length = 165

 Score =  211 bits (536), Expect = 1e-54
 Identities = 98/162 (60%), Positives = 129/162 (79%)
 Frame = +1

Query: 28  MAPKLDPTAITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATTEWKGLRITV 207
           M PK DP  +  +++R VGGEV   ++LAPK+GPLGLSPKKVG+DIAKAT +WKGLR+TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 208 KLTIQNRQAEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRS 387
           KLTIQNRQA +SVVP+A++L++K LKEPARDRKK KN+ H GNV+ D +IE+A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 388 CGKTLQDTVKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 513
             K L  TVKEILGTA S+GCT+D + P D+  +++ GE+ +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
          Length = 157

 Score =  201 bits (512), Expect = 6e-52
 Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
 Frame = +1

Query: 55  ITYVYLRVVGGEVGAVASLAPKLGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQ 231
           +  V +RV GGEVG  +SLAPK+GPLGLSPKK+G+DIAK T  +WKGLRITVKLT+QNRQ
Sbjct: 1   VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60

Query: 232 AEISVVPNAASLLVKELKEPARDRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDT 411
           A+ISV+P+AA+L++K LKEPARDRKK KNIKH G+V    +IEIA++MRPRSC K L + 
Sbjct: 61  AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120

Query: 412 VKEILGTARSIGCTIDNEPPQDIIAKLNEGELTV 513
            KEILGTA S+GC +D + P+D+I+ +++G + +
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEI 154
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,894,882
Number of Sequences: 369166
Number of extensions: 1109891
Number of successful extensions: 3519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3493
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)