Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_F12
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 >gi|48429087... 187 7e-48
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 182 2e-46
sp|P50883|RL12_ARATH 60S ribosomal protein L12 182 3e-46
sp|P23358|RL12_RAT 60S ribosomal protein L12 180 8e-46
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 180 1e-45
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 >gi|266921|s... 180 1e-45
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 178 4e-45
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 177 7e-45
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 170 8e-43
sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23) 168 3e-42
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12
Length = 165
Score = 187 bits (475), Expect = 7e-48
Identities = 88/131 (67%), Positives = 111/131 (84%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKK+G+DIAKAT +WKGL++T KLTIQNR A+I VVP+AASL+VKELKEP RD
Sbjct: 32 VGPLGLSPKKIGEDIAKATQDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKKVKN+KH+G++ D +I+IA+IMRPRS K L+ TVKEILGTA+S+GCTID + P DI
Sbjct: 92 RKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDI 151
Query: 363 IAKLNEGELTV 395
I + GE+ +
Sbjct: 152 IESIANGEIEI 162
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12
Length = 165
Score = 182 bits (462), Expect = 2e-46
Identities = 86/127 (67%), Positives = 104/127 (81%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K LKEP RD
Sbjct: 32 IGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKK KNIKH GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +DN P DI
Sbjct: 92 RKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDI 151
Query: 363 IAKLNEG 383
I +N G
Sbjct: 152 IDDINNG 158
>sp|P50883|RL12_ARATH 60S ribosomal protein L12
Length = 166
Score = 182 bits (461), Expect = 3e-46
Identities = 85/132 (64%), Positives = 112/132 (84%), Gaps = 1/132 (0%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPAR 179
+GPLGL+PKK+G+DIAK T EWKGLR+TVKLT+QNRQA+++VVP+AA+L++K LKEP R
Sbjct: 32 IGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPER 91
Query: 180 DRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQD 359
DRKKVKNIKH+GN++FD V EIA+IMRPRS K L TV+EILGT S+GCT+D + P+D
Sbjct: 92 DRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKD 151
Query: 360 IIAKLNEGELTV 395
I ++ +GE+ +
Sbjct: 152 IQQEIQDGEVEI 163
>sp|P23358|RL12_RAT 60S ribosomal protein L12
Length = 165
Score = 180 bits (457), Expect = 8e-46
Identities = 85/127 (66%), Positives = 104/127 (81%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K LKEP RD
Sbjct: 32 IGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKK KNIKH+GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +D P DI
Sbjct: 92 RKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDI 151
Query: 363 IAKLNEG 383
I +N G
Sbjct: 152 IDDINSG 158
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12
Length = 165
Score = 180 bits (456), Expect = 1e-45
Identities = 85/127 (66%), Positives = 103/127 (81%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K LKEP RD
Sbjct: 32 IGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKK KNIKH GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +D P DI
Sbjct: 92 RKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDI 151
Query: 363 IAKLNEG 383
I +N G
Sbjct: 152 IDDINSG 158
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12
sp|P30050|RL12_HUMAN 60S ribosomal protein L12
Length = 165
Score = 180 bits (456), Expect = 1e-45
Identities = 85/127 (66%), Positives = 103/127 (81%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKKVGDDIAKAT +WKGLRITVKLTIQNRQA+I VVP+A++L++K LKEP RD
Sbjct: 32 IGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKK KNIKH GN+ FD ++ IA+ MR RS + L T+KEILGTA+S+GC +D P DI
Sbjct: 92 RKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDI 151
Query: 363 IAKLNEG 383
I +N G
Sbjct: 152 IDDINSG 158
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
Length = 165
Score = 178 bits (451), Expect = 4e-45
Identities = 83/131 (63%), Positives = 108/131 (82%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKKVG+DIAKAT +WKGLR+TVKLTIQNRQA +SVVP+A++L++K LKEPARD
Sbjct: 32 IGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKK KN+ H GNV+ D +IE+A+ MR +S K L TVKEILGTA S+GCT+D + P D+
Sbjct: 92 RKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDV 151
Query: 363 IAKLNEGELTV 395
+++ GE+ +
Sbjct: 152 QKEIDNGEIEI 162
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12
Length = 157
Score = 177 bits (449), Expect = 7e-45
Identities = 83/132 (62%), Positives = 110/132 (83%), Gaps = 1/132 (0%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPAR 179
+GPLGLSPKK+G+DIAK T +WKGLRITVKLT+QNRQA+ISV+P+AA+L++K LKEPAR
Sbjct: 23 IGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPAR 82
Query: 180 DRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQD 359
DRKK KNIKH G+V +IEIA++MRPRSC K L + KEILGTA S+GC +D + P+D
Sbjct: 83 DRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRD 142
Query: 360 IIAKLNEGELTV 395
+I+ +++G + +
Sbjct: 143 VISAIDDGAIEI 154
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12
Length = 166
Score = 170 bits (431), Expect = 8e-43
Identities = 81/132 (61%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATT-EWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPAR 179
+GPLGLSPKK+G+DIAK T +WKGLR+TVKLT+QNRQA++SVVP+AA+L++K LKEP R
Sbjct: 32 IGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPER 91
Query: 180 DRKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQD 359
DRKK KNIKH G+++ D VIEIAKIM+ RS K L TVKEIL T S+GCT+D + P+D
Sbjct: 92 DRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKD 151
Query: 360 IIAKLNEGELTV 395
+ ++ +G++ +
Sbjct: 152 LQQEIADGDVEI 163
>sp|P17079|RL12_YEAST 60S ribosomal protein L12 (L15) (YL23)
Length = 165
Score = 168 bits (426), Expect = 3e-42
Identities = 80/131 (61%), Positives = 104/131 (79%)
Frame = +3
Query: 3 LGPLGLSPKKVGDDIAKATTEWKGLRITVKLTIQNRQAEISVVPNAASLLVKELKEPARD 182
+GPLGLSPKKVG+DIAKAT E+KG+++TV+L IQNRQA SVVP+A+SL++ LKEP RD
Sbjct: 32 IGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRD 91
Query: 183 RKKVKNIKHDGNVNFDAVIEIAKIMRPRSCGKTLQDTVKEILGTARSIGCTIDNEPPQDI 362
RKK KN+KH GN+ D +IEIA+ MR +S G+TL KEILGTA+S+GC +D + P DI
Sbjct: 92 RKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDFKNPHDI 151
Query: 363 IAKLNEGELTV 395
I +N GE+ +
Sbjct: 152 IEGINAGEIEI 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,458,057
Number of Sequences: 369166
Number of extensions: 863571
Number of successful extensions: 2753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)