Planarian EST Database

DrC_00689

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00689 AATTACTAACAGACTTTATTTTAAAACATGCGATACATTTCATCATATATCTTATCTGTT CTTGGTGGAAATTCAGAACCTGAAGCAGAAGATATTGGAACTATTTTGTCATCTGTTGGA ATAGAATGTGACACAAACAAAGCTAAAGAAGTTGTTCAAGCTATTGATTGCCGTGATATT AATGAATTAATTGCTGATGGTTTGAAAAAAATATCATCAGTACCAACTGGTGGAGCAGCA TCTGCTCCTGCTGCTACATCAGCTCCAGCTCCATCTGCTGCTAAAGAAGAACCAAAAGCA GCAGCTAAGGAATCTAGTTCCGAATCTGAAGCTGACATGGGTTTTGGATTGTTCGATTAA TTTTTAAATTAATAAAAATGGAATTATTAGTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00689
         (392 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05387|RLA2_HUMAN  60S acidic ribosomal protein P2              77   1e-14
sp|P99027|RLA2_MOUSE  60S acidic ribosomal protein P2              77   2e-14
sp|P42038|RLA3_CLAHE  60S acidic ribosomal protein P2 (Aller...    77   2e-14
sp|P02401|RLA2_RAT  60S acidic ribosomal protein P2                76   2e-14
sp|P42899|RLA2_BOVIN  60S acidic ribosomal protein P2              76   2e-14
sp|P42039|RLA4_CLAHE  60S acidic ribosomal protein P2 (Minor...    75   4e-14
sp|O61463|RLA2_CRYST  60S acidic ribosomal protein P2              75   5e-14
sp|P08094|RLA2_SCHPO  60S acidic ribosomal protein P2-alpha ...    74   8e-14
sp|Q29315|RLA2_PIG  60S acidic ribosomal protein P2                74   8e-14
sp|P42037|RLA2_ALTAL  60S acidic ribosomal protein P2 (Minor...    74   1e-13

>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
          Length = 115

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 34/69 (49%), Positives = 52/69 (75%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           MRY++SY+L+ LGGNS P A+DI  IL SVGIE D ++  +V+  ++ ++I ++IA G+ 
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 208 KISSVPTGG 234
           K++SVP GG
Sbjct: 61  KLASVPAGG 69

>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
          Length = 115

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 34/69 (49%), Positives = 52/69 (75%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           MRY++SY+L+ LGGNS P A+DI  IL SVGIE D ++  +V+  ++ ++I ++IA G+ 
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVG 60

Query: 208 KISSVPTGG 234
           K++SVP GG
Sbjct: 61  KLASVPAGG 69

>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
          Length = 111

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           M+Y+++Y+L  L GNS P AEDI T+LSSVGI+ D  +   +++ ++ +DINELI+ G +
Sbjct: 1   MKYMAAYLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQ 60

Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 357
           K++SVP+GG                                 D MGFGLFD
Sbjct: 61  KLASVPSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111

>sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2
          Length = 115

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 34/69 (49%), Positives = 51/69 (73%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           MRY++SY+L+ LGGNS P A+DI  IL SVGIE D  +  +V+  ++ ++I ++IA G+ 
Sbjct: 1   MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVG 60

Query: 208 KISSVPTGG 234
           K++SVP GG
Sbjct: 61  KLASVPAGG 69

>sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2
          Length = 115

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 34/69 (49%), Positives = 51/69 (73%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           MRY++SY+L+ LGGNS P A+DI  IL SVGIE D ++  +V+  +  ++I ++IA G+ 
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIG 60

Query: 208 KISSVPTGG 234
           K++SVP GG
Sbjct: 61  KLASVPAGG 69

>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
          Length = 111

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           M+Y+++++L  L GNS P AEDI T+LSSVGI+ D  +   +++ ++ +DINELI+ G +
Sbjct: 1   MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSE 60

Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 357
           K++SVP+GG                                 D MGFGLFD
Sbjct: 61  KLASVPSGGAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111

>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
          Length = 110

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 38/110 (34%), Positives = 60/110 (54%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           MRY+++Y+L+ LGGN +P   D+  IL SVGIE + ++  +V+  +  ++++E+IA+G K
Sbjct: 1   MRYVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEK 60

Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 357
           K++SVP+GG                                 DMGFGLFD
Sbjct: 61  KLASVPSGGGVAAAAPAAGGGGADPAEAKEEKKEEPEEESDDDMGFGLFD 110

>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
          Length = 110

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 37/110 (33%), Positives = 60/110 (54%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           M+Y+++Y+L  +GG   P A DI ++LS+VGIE ++ + + ++  ++ +DI+ELIA G +
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 357
           K+++VPTGG                                 DMGFGLFD
Sbjct: 61  KLATVPTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110

>sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2
          Length = 115

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 32/69 (46%), Positives = 52/69 (75%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           MRY++SY+L+ LGGN+ P A+DI   L SVGIE D ++  +V+  ++ ++I ++IA G+ 
Sbjct: 1   MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIG 60

Query: 208 KISSVPTGG 234
           K++SVP+GG
Sbjct: 61  KLASVPSGG 69

>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
          Length = 113

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 31/69 (44%), Positives = 53/69 (76%)
 Frame = +1

Query: 28  MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
           M+++++Y+L  LGGN+ P A D+  +L SVGIE D+++  +++  ++ +DINELIA G +
Sbjct: 1   MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSE 60

Query: 208 KISSVPTGG 234
           K++SVP+GG
Sbjct: 61  KLASVPSGG 69

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,702,182
Number of Sequences: 369166
Number of extensions: 403438
Number of successful extensions: 1352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00689

Planaria EST Database

DrC_00689

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail