Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K01
(321 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 63 2e-10
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 63 2e-10
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 60 2e-09
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl ... 59 3e-09
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 58 6e-09
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 57 1e-08
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 57 1e-08
sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor... 56 2e-08
sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 56 2e-08
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 56 3e-08
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 63.2 bits (152), Expect = 2e-10
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXX 182
NS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 15 NSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVPSGGSGAAP 74
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 290
D MGFGLFD
Sbjct: 75 SAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 63.2 bits (152), Expect = 2e-10
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXX 182
NS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 15 NSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGGAGAAS 74
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 290
D MGFGLFD
Sbjct: 75 AGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 59.7 bits (143), Expect = 2e-09
Identities = 25/55 (45%), Positives = 41/55 (74%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 167
N+ P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +K++SVP+GG
Sbjct: 15 NTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGG 69
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl carrier protein)
Length = 110
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/96 (30%), Positives = 48/96 (50%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXX 182
N+ P AED+ +L++ I+ D + +++ ++ +D+NE+IA+G KK++SVP+GG
Sbjct: 15 NTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKLASVPSGGAAPAA 74
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 290
DMGFGLFD
Sbjct: 75 AAGGAAAGGAAEEKAEDKPAEKDEESDDDMGFGLFD 110
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 58.2 bits (139), Expect = 6e-09
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +3
Query: 12 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 191
P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K+++VPTGG
Sbjct: 18 PSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAASAAPAA 77
Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 290
DMGFGLFD
Sbjct: 78 AAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXX 182
N+ P +ED+ +LSSVGI+ D + +++ ++ +D+ ELIA+G K++SVP+GG
Sbjct: 15 NTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVPSGGAAAAA 74
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXX-DMGFGLFD 290
DMGFGLFD
Sbjct: 75 PAAAGAAAGGAAAPAAKEKNEEEKEESDEDMGFGLFD 111
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 12 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 191
P A D+ +L SVGIE D+++ +++ ++ +D+NELIA+G K++SVP+GG
Sbjct: 18 PSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSGGAGGAAAAG 77
Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 290
D MGFGLFD
Sbjct: 78 GAAAAGGAAEAAPEEAKEEEKEESDDDMGFGLFD 111
>sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor allergen Fus c 1)
Length = 109
Score = 56.2 bits (134), Expect = 2e-08
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXX 182
N+ P A D+ +L+SVGI+ D ++ +++ ++ +DI +LIA+G +K++SVP+GG
Sbjct: 15 NTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKLASVPSGG-AGGA 73
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 290
DMGFGLFD
Sbjct: 74 SGGAAAAGGAAEEAKEEEKEEEKEESDEDMGFGLFD 109
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12)
Length = 111
Score = 56.2 bits (134), Expect = 2e-08
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXX 182
N++P DI ILSSVGIEC+ ++ ++V+ + +D+ LIA+G K++S+PTGG
Sbjct: 15 NADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKLASMPTGGAPAAA 74
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXX-DMGFGLFD 290
DMGFGLFD
Sbjct: 75 AGGAATAPAAEAKEAKKEEKKEESEEEDEDMGFGLFD 111
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 55.8 bits (133), Expect = 3e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +3
Query: 3 NSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 167
NS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++SVP GG
Sbjct: 15 NSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,758,247
Number of Sequences: 369166
Number of extensions: 233999
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)