Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J02
(325 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 65 4e-11
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 65 4e-11
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 64 8e-11
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 63 2e-10
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl ... 62 5e-10
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 62 5e-10
sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor... 61 9e-10
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 60 1e-09
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 60 2e-09
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 60 2e-09
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 65.5 bits (158), Expect = 4e-11
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +1
Query: 4 GNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXX 183
GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 14 GNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVPSGGSGAA 73
Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 294
D MGFGLFD
Sbjct: 74 PSAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 65.5 bits (158), Expect = 4e-11
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +1
Query: 4 GNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXX 183
GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 14 GNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGGAGAA 73
Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 294
D MGFGLFD
Sbjct: 74 SAGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 64.3 bits (155), Expect = 8e-11
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 171
GGN+ P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +K++SVP+GG
Sbjct: 13 GGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGG 69
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/98 (33%), Positives = 50/98 (51%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXX 180
GG P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K+++VPTGG
Sbjct: 13 GGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAAS 72
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 294
DMGFGLFD
Sbjct: 73 AAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl carrier protein)
Length = 110
Score = 61.6 bits (148), Expect = 5e-10
Identities = 30/97 (30%), Positives = 49/97 (50%)
Frame = +1
Query: 4 GNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXX 183
GN+ P AED+ +L++ I+ D + +++ ++ +D+NE+IA+G KK++SVP+GG
Sbjct: 14 GNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKLASVPSGGAAPA 73
Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 294
DMGFGLFD
Sbjct: 74 AAAGGAAAGGAAEEKAEDKPAEKDEESDDDMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 61.6 bits (148), Expect = 5e-10
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXX 180
GG + P A D+ +L SVGIE D+++ +++ ++ +D+NELIA+G K++SVP+GG
Sbjct: 13 GGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSGGAGG 72
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 294
D MGFGLFD
Sbjct: 73 AAAAGGAAAAGGAAEAAPEEAKEEEKEESDDDMGFGLFD 111
>sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor allergen Fus c 1)
Length = 109
Score = 60.8 bits (146), Expect = 9e-10
Identities = 32/98 (32%), Positives = 51/98 (52%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXX 180
GGN+ P A D+ +L+SVGI+ D ++ +++ ++ +DI +LIA+G +K++SVP+GG
Sbjct: 13 GGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKLASVPSGG-AG 71
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 294
DMGFGLFD
Sbjct: 72 GASGGAAAAGGAAEEAKEEEKEEEKEESDEDMGFGLFD 109
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 60.5 bits (145), Expect = 1e-09
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 171
GGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++SVP GG
Sbjct: 13 GGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 60.1 bits (144), Expect = 2e-09
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 171
GGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++SVP GG
Sbjct: 13 GGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKLASVPAGG 69
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 60.1 bits (144), Expect = 2e-09
Identities = 32/98 (32%), Positives = 49/98 (50%)
Frame = +1
Query: 1 GGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXX 180
GGN +P D+ IL SVGIE + ++ +V+ + ++++E+IA+G KK++SVP+GG
Sbjct: 13 GGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVPSGGGVA 72
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 294
DMGFGLFD
Sbjct: 73 AAAPAAGGGGADPAEAKEEKKEEPEEESDDDMGFGLFD 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,571,703
Number of Sequences: 369166
Number of extensions: 252687
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)