Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L24
(364 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 75 5e-14
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 75 6e-14
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 75 6e-14
sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2 74 8e-14
sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2 74 8e-14
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 74 1e-13
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 73 2e-13
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 72 3e-13
sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2 72 3e-13
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 72 4e-13
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 75.1 bits (183), Expect = 5e-14
Identities = 33/68 (48%), Positives = 51/68 (75%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
RY++SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K
Sbjct: 2 RYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGK 61
Query: 183 ISSVPTGG 206
++SVP GG
Sbjct: 62 LASVPAGG 69
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 74.7 bits (182), Expect = 6e-14
Identities = 33/68 (48%), Positives = 51/68 (75%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
RY++SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K
Sbjct: 2 RYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGK 61
Query: 183 ISSVPTGG 206
++SVP GG
Sbjct: 62 LASVPAGG 69
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 74.7 bits (182), Expect = 6e-14
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
+Y+++Y+L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K
Sbjct: 2 KYMAAYLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQK 61
Query: 183 ISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 329
++SVP+GG D MGFGLFD
Sbjct: 62 LASVPSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2
Length = 115
Score = 74.3 bits (181), Expect = 8e-14
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
RY++SY+L+ LGGNS P A+DI IL SVGIE D + +V+ ++ ++I ++IA G+ K
Sbjct: 2 RYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGK 61
Query: 183 ISSVPTGG 206
++SVP GG
Sbjct: 62 LASVPAGG 69
>sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2
Length = 115
Score = 74.3 bits (181), Expect = 8e-14
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
RY++SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ + ++I ++IA G+ K
Sbjct: 2 RYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGK 61
Query: 183 ISSVPTGG 206
++SVP GG
Sbjct: 62 LASVPAGG 69
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 73.6 bits (179), Expect = 1e-13
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
+Y+++++L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K
Sbjct: 2 KYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEK 61
Query: 183 ISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 329
++SVP+GG D MGFGLFD
Sbjct: 62 LASVPSGGAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 73.2 bits (178), Expect = 2e-13
Identities = 37/109 (33%), Positives = 59/109 (54%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
RY+++Y+L+ LGGN +P D+ IL SVGIE + ++ +V+ + ++++E+IA+G KK
Sbjct: 2 RYVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKK 61
Query: 183 ISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 329
++SVP+GG DMGFGLFD
Sbjct: 62 LASVPSGGGVAAAAPAAGGGGADPAEAKEEKKEEPEEESDDDMGFGLFD 110
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 72.4 bits (176), Expect = 3e-13
Identities = 36/109 (33%), Positives = 59/109 (54%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
+Y+++Y+L +GG P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K
Sbjct: 2 KYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEK 61
Query: 183 ISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 329
+++VPTGG DMGFGLFD
Sbjct: 62 LATVPTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2
Length = 115
Score = 72.4 bits (176), Expect = 3e-13
Identities = 31/68 (45%), Positives = 51/68 (75%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
RY++SY+L+ LGGN+ P A+DI L SVGIE D ++ +V+ ++ ++I ++IA G+ K
Sbjct: 2 RYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIGK 61
Query: 183 ISSVPTGG 206
++SVP+GG
Sbjct: 62 LASVPSGG 69
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 72.0 bits (175), Expect = 4e-13
Identities = 30/68 (44%), Positives = 52/68 (76%)
Frame = +3
Query: 3 RYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKK 182
+++++Y+L LGGN+ P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +K
Sbjct: 2 KHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEK 61
Query: 183 ISSVPTGG 206
++SVP+GG
Sbjct: 62 LASVPSGG 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,104,312
Number of Sequences: 369166
Number of extensions: 344930
Number of successful extensions: 1198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)