Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A01
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 71 9e-13
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 70 2e-12
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 69 3e-12
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 69 3e-12
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 69 3e-12
sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2 69 4e-12
sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2 69 4e-12
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 68 6e-12
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 68 6e-12
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl ... 67 1e-11
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 70.9 bits (172), Expect = 9e-13
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
++Y+L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++S
Sbjct: 5 AAYLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLAS 64
Query: 182 VPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 319
VP+GG D MGFGLFD
Sbjct: 65 VPSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 69.7 bits (169), Expect = 2e-12
Identities = 30/65 (46%), Positives = 49/65 (75%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
++Y+L LGGN+ P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +K++S
Sbjct: 5 AAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLAS 64
Query: 182 VPTGG 196
VP+GG
Sbjct: 65 VPSGG 69
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 69.3 bits (168), Expect = 3e-12
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
+SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++S
Sbjct: 5 ASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLAS 64
Query: 182 VPTGG 196
VP GG
Sbjct: 65 VPAGG 69
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 69.3 bits (168), Expect = 3e-12
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
++++L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++S
Sbjct: 5 AAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLAS 64
Query: 182 VPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 319
VP+GG D MGFGLFD
Sbjct: 65 VPSGGAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 68.9 bits (167), Expect = 3e-12
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
+SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++S
Sbjct: 5 ASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKLAS 64
Query: 182 VPTGG 196
VP GG
Sbjct: 65 VPAGG 69
>sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2
Length = 115
Score = 68.6 bits (166), Expect = 4e-12
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
+SY+L+ LGGNS P A+DI IL SVGIE D + +V+ ++ ++I ++IA G+ K++S
Sbjct: 5 ASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKLAS 64
Query: 182 VPTGG 196
VP GG
Sbjct: 65 VPAGG 69
>sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2
Length = 115
Score = 68.6 bits (166), Expect = 4e-12
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
+SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ + ++I ++IA G+ K++S
Sbjct: 5 ASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKLAS 64
Query: 182 VPTGG 196
VP GG
Sbjct: 65 VPAGG 69
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/106 (33%), Positives = 56/106 (52%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
++Y+L +GG P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K+++
Sbjct: 5 AAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLAT 64
Query: 182 VPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 319
VPTGG DMGFGLFD
Sbjct: 65 VPTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 68.2 bits (165), Expect = 6e-12
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
++Y+L LGG + P A D+ +L SVGIE D+++ +++ ++ +D+NELIA+G K++S
Sbjct: 5 AAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLAS 64
Query: 182 VPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 319
VP+GG D MGFGLFD
Sbjct: 65 VPSGGAGGAAAAGGAAAAGGAAEAAPEEAKEEEKEESDDDMGFGLFD 111
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl carrier protein)
Length = 110
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/106 (31%), Positives = 55/106 (51%)
Frame = +2
Query: 2 SSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISS 181
++Y+L V GN+ P AED+ +L++ I+ D + +++ ++ +D+NE+IA+G KK++S
Sbjct: 5 AAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKLAS 64
Query: 182 VPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 319
VP+GG DMGFGLFD
Sbjct: 65 VPSGGAAPAAAAGGAAAGGAAEEKAEDKPAEKDEESDDDMGFGLFD 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,127,040
Number of Sequences: 369166
Number of extensions: 319963
Number of successful extensions: 1076
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)