Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M03
(298 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 51 9e-07
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 50 1e-06
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 50 1e-06
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 50 2e-06
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 50 2e-06
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 49 5e-06
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl ... 48 6e-06
sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 48 8e-06
sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor... 47 1e-05
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 47 2e-05
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 50.8 bits (120), Expect = 9e-07
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = +3
Query: 6 TILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXX 185
++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K+++VPTGG
Sbjct: 25 SVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAASAAPAAAAGGAAP 84
Query: 186 XXXXXXXXXXXXXXXXXXDMGFGLFD 263
DMGFGLFD
Sbjct: 85 AAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 50.4 bits (119), Expect = 1e-06
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXXX 188
+L SVGIE D+++ +++ ++ +D+NELIA+G K++SVP+GG
Sbjct: 26 VLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSGGAGGAAAAGGAAAAGGA 85
Query: 189 XXXXXXXXXXXXXXXXXD-MGFGLFD 263
D MGFGLFD
Sbjct: 86 AEAAPEEAKEEEKEESDDDMGFGLFD 111
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/44 (47%), Positives = 35/44 (79%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 140
+L SVGIE D+++ +++ ++ +DINELIA G +K++SVP+GG
Sbjct: 26 VLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGG 69
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +3
Query: 6 TILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXX 185
T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 25 TVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVPSGGSGAAPSAGGAAAAGG 84
Query: 186 XXXXXXXXXXXXXXXXXXD-MGFGLFD 263
D MGFGLFD
Sbjct: 85 ATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +3
Query: 6 TILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXX 185
T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 25 TVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGGAGAASAGGAAAAGGA 84
Query: 186 XXXXXXXXXXXXXXXXXXD-MGFGLFD 263
D MGFGLFD
Sbjct: 85 AEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 48.5 bits (114), Expect = 5e-06
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXXX 188
IL SVGIE + ++ +V+ + ++++E+IA+G KK++SVP+GG
Sbjct: 26 ILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVPSGGGVAAAAPAAGGGGADP 85
Query: 189 XXXXXXXXXXXXXXXXXDMGFGLFD 263
DMGFGLFD
Sbjct: 86 AEAKEEKKEEPEEESDDDMGFGLFD 110
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl carrier protein)
Length = 110
Score = 48.1 bits (113), Expect = 6e-06
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXXX 188
+L++ I+ D + +++ ++ +D+NE+IA+G KK++SVP+GG
Sbjct: 26 VLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKLASVPSGGAAPAAAAGGAAAGGAA 85
Query: 189 XXXXXXXXXXXXXXXXXDMGFGLFD 263
DMGFGLFD
Sbjct: 86 EEKAEDKPAEKDEESDDDMGFGLFD 110
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12)
Length = 111
Score = 47.8 bits (112), Expect = 8e-06
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXXX 188
ILSSVGIEC+ ++ ++V+ + +D+ LIA+G K++S+PTGG
Sbjct: 26 ILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKLASMPTGGAPAAAAGGAATAPAAE 85
Query: 189 XXXXXXXXXXXXXXXXX-DMGFGLFD 263
DMGFGLFD
Sbjct: 86 AKEAKKEEKKEESEEEDEDMGFGLFD 111
>sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor allergen Fus c 1)
Length = 109
Score = 47.0 bits (110), Expect = 1e-05
Identities = 26/85 (30%), Positives = 43/85 (50%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXXX 188
+L+SVGI+ D ++ +++ ++ +DI +LIA+G +K++SVP+GG
Sbjct: 26 VLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKLASVPSGG-AGGASGGAAAAGGAA 84
Query: 189 XXXXXXXXXXXXXXXXXDMGFGLFD 263
DMGFGLFD
Sbjct: 85 EEAKEEEKEEEKEESDEDMGFGLFD 109
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 ILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXXXXXXXXXX 188
+LSSVGI+ D + +++ ++ +D+ ELIA+G K++SVP+GG
Sbjct: 26 VLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVPSGGAAAAAPAAAGAAAGGA 85
Query: 189 XXXXXXXXXXXXXXXXX-DMGFGLFD 263
DMGFGLFD
Sbjct: 86 AAPAAKEKNEEEKEESDEDMGFGLFD 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,354,777
Number of Sequences: 369166
Number of extensions: 176532
Number of successful extensions: 578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)