Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_B16
(347 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 70 1e-12
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 69 3e-12
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 69 3e-12
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 69 3e-12
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 69 4e-12
sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2 68 6e-12
sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2 68 6e-12
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 68 7e-12
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 68 7e-12
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl ... 67 1e-11
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 70.5 bits (171), Expect = 1e-12
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
+Y+L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SV
Sbjct: 6 AYLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASV 65
Query: 182 PTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 316
P+GG D MGFGLFD
Sbjct: 66 PSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 69.3 bits (168), Expect = 3e-12
Identities = 30/64 (46%), Positives = 48/64 (75%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
+Y+L LGGN+ P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +K++SV
Sbjct: 6 AYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASV 65
Query: 182 PTGG 193
P+GG
Sbjct: 66 PSGG 69
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 68.9 bits (167), Expect = 3e-12
Identities = 31/64 (48%), Positives = 47/64 (73%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++SV
Sbjct: 6 SYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65
Query: 182 PTGG 193
P GG
Sbjct: 66 PAGG 69
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 68.9 bits (167), Expect = 3e-12
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
+++L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SV
Sbjct: 6 AFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASV 65
Query: 182 PTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 316
P+GG D MGFGLFD
Sbjct: 66 PSGGAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 68.6 bits (166), Expect = 4e-12
Identities = 31/64 (48%), Positives = 47/64 (73%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+ K++SV
Sbjct: 6 SYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKLASV 65
Query: 182 PTGG 193
P GG
Sbjct: 66 PAGG 69
>sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2
Length = 115
Score = 68.2 bits (165), Expect = 6e-12
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
SY+L+ LGGNS P A+DI IL SVGIE D + +V+ ++ ++I ++IA G+ K++SV
Sbjct: 6 SYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKLASV 65
Query: 182 PTGG 193
P GG
Sbjct: 66 PAGG 69
>sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2
Length = 115
Score = 68.2 bits (165), Expect = 6e-12
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ + ++I ++IA G+ K++SV
Sbjct: 6 SYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKLASV 65
Query: 182 PTGG 193
P GG
Sbjct: 66 PAGG 69
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 67.8 bits (164), Expect = 7e-12
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
+Y+L +GG P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K+++V
Sbjct: 6 AYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATV 65
Query: 182 PTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 316
PTGG DMGFGLFD
Sbjct: 66 PTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 67.8 bits (164), Expect = 7e-12
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
+Y+L LGG + P A D+ +L SVGIE D+++ +++ ++ +D+NELIA+G K++SV
Sbjct: 6 AYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASV 65
Query: 182 PTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 316
P+GG D MGFGLFD
Sbjct: 66 PSGGAGGAAAAGGAAAAGGAAEAAPEEAKEEEKEESDDDMGFGLFD 111
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl carrier protein)
Length = 110
Score = 67.0 bits (162), Expect = 1e-11
Identities = 33/105 (31%), Positives = 54/105 (51%)
Frame = +2
Query: 2 SYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSV 181
+Y+L V GN+ P AED+ +L++ I+ D + +++ ++ +D+NE+IA+G KK++SV
Sbjct: 6 AYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKLASV 65
Query: 182 PTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 316
P+GG DMGFGLFD
Sbjct: 66 PSGGAAPAAAAGGAAAGGAAEEKAEDKPAEKDEESDDDMGFGLFD 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,734,424
Number of Sequences: 369166
Number of extensions: 311845
Number of successful extensions: 1041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)