Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_P22
(381 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 77 1e-14
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 77 2e-14
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 77 2e-14
sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2 76 2e-14
sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2 76 2e-14
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 75 4e-14
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 75 5e-14
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 74 8e-14
sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2 74 8e-14
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 74 1e-13
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 77.0 bits (188), Expect = 1e-14
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
MRY++SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 208 KISSVPTGG 234
K++SVP GG
Sbjct: 61 KLASVPAGG 69
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
MRY++SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ ++ ++I ++IA G+
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVG 60
Query: 208 KISSVPTGG 234
K++SVP GG
Sbjct: 61 KLASVPAGG 69
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 76.6 bits (187), Expect = 2e-14
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
M+Y+++Y+L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +
Sbjct: 1 MKYMAAYLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQ 60
Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 357
K++SVP+GG D MGFGLFD
Sbjct: 61 KLASVPSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2
Length = 115
Score = 76.3 bits (186), Expect = 2e-14
Identities = 34/69 (49%), Positives = 51/69 (73%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
MRY++SY+L+ LGGNS P A+DI IL SVGIE D + +V+ ++ ++I ++IA G+
Sbjct: 1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVG 60
Query: 208 KISSVPTGG 234
K++SVP GG
Sbjct: 61 KLASVPAGG 69
>sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2
Length = 115
Score = 76.3 bits (186), Expect = 2e-14
Identities = 34/69 (49%), Positives = 51/69 (73%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
MRY++SY+L+ LGGNS P A+DI IL SVGIE D ++ +V+ + ++I ++IA G+
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIG 60
Query: 208 KISSVPTGG 234
K++SVP GG
Sbjct: 61 KLASVPAGG 69
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 75.5 bits (184), Expect = 4e-14
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
M+Y+++++L L GNS P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +
Sbjct: 1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSE 60
Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 357
K++SVP+GG D MGFGLFD
Sbjct: 61 KLASVPSGGAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 75.1 bits (183), Expect = 5e-14
Identities = 38/110 (34%), Positives = 60/110 (54%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
MRY+++Y+L+ LGGN +P D+ IL SVGIE + ++ +V+ + ++++E+IA+G K
Sbjct: 1 MRYVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEK 60
Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 357
K++SVP+GG DMGFGLFD
Sbjct: 61 KLASVPSGGGVAAAAPAAGGGGADPAEAKEEKKEEPEEESDDDMGFGLFD 110
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 74.3 bits (181), Expect = 8e-14
Identities = 37/110 (33%), Positives = 60/110 (54%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
M+Y+++Y+L +GG P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 208 KISSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 357
K+++VPTGG DMGFGLFD
Sbjct: 61 KLATVPTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2
Length = 115
Score = 74.3 bits (181), Expect = 8e-14
Identities = 32/69 (46%), Positives = 52/69 (75%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
MRY++SY+L+ LGGN+ P A+DI L SVGIE D ++ +V+ ++ ++I ++IA G+
Sbjct: 1 MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIG 60
Query: 208 KISSVPTGG 234
K++SVP+GG
Sbjct: 61 KLASVPSGG 69
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 73.9 bits (180), Expect = 1e-13
Identities = 31/69 (44%), Positives = 53/69 (76%)
Frame = +1
Query: 28 MRYISSYILSVLGGNSEPEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLK 207
M+++++Y+L LGGN+ P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +
Sbjct: 1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSE 60
Query: 208 KISSVPTGG 234
K++SVP+GG
Sbjct: 61 KLASVPSGG 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,949,296
Number of Sequences: 369166
Number of extensions: 393877
Number of successful extensions: 1322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)