Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_D08
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 59 3e-09
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 59 3e-09
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 58 6e-09
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl ... 58 8e-09
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 57 1e-08
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 57 1e-08
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 54 9e-08
sp|P17478|RLA4_SCHPO 60S acidic ribosomal protein P2-beta (A4) 54 1e-07
sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor... 54 1e-07
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 53 2e-07
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 59.3 bits (142), Expect = 3e-09
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 18 PSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVPSGGSGAAPSAG 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 337
D MGFGLFD
Sbjct: 78 GAAAAGGATEAAPEAAKEEEKEESDDDMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 59.3 bits (142), Expect = 3e-09
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P AEDI T+LSSVGI+ D + +++ ++ +DINELI+ G +K++SVP+GG
Sbjct: 18 PSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGGAGAASAGG 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 337
D MGFGLFD
Sbjct: 78 AAAAGGAAEAAPEAERAEEEKEESDDDMGFGLFD 111
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 58.2 bits (139), Expect = 6e-09
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P A DI ++LS+VGIE ++ + + ++ ++ +DI+ELIA G +K+++VPTGG
Sbjct: 18 PSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAASAAPAA 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 337
DMGFGLFD
Sbjct: 78 AAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 (Acyl carrier protein)
Length = 110
Score = 57.8 bits (138), Expect = 8e-09
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Frame = +2
Query: 17 HHISYLFLVEI-LL*PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKI 193
H +YL LV P AED+ +L++ I+ D + +++ ++ +D+NE+IA+G KK+
Sbjct: 3 HVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKL 62
Query: 194 SSVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 337
+SVP+GG DMGFGLFD
Sbjct: 63 ASVPSGGAAPAAAAGGAAAGGAAEEKAEDKPAEKDEESDDDMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P A D+ +L SVGIE D+++ +++ ++ +D+NELIA+G K++SVP+GG
Sbjct: 18 PSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSGGAGGAAAAG 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXD-MGFGLFD 337
D MGFGLFD
Sbjct: 78 GAAAAGGAAEAAPEEAKEEEKEESDDDMGFGLFD 111
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 57.0 bits (136), Expect = 1e-08
Identities = 24/52 (46%), Positives = 39/52 (75%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGG 214
P A D+ +L SVGIE D+++ +++ ++ +DINELIA G +K++SVP+GG
Sbjct: 18 PSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGG 69
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 54.3 bits (129), Expect = 9e-08
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P +ED+ +LSSVGI+ D + +++ ++ +D+ ELIA+G K++SVP+GG
Sbjct: 18 PSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVPSGGAAAAAPAA 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXX-DMGFGLFD 337
DMGFGLFD
Sbjct: 78 AGAAAGGAAAPAAKEKNEEEKEESDEDMGFGLFD 111
>sp|P17478|RLA4_SCHPO 60S acidic ribosomal protein P2-beta (A4)
Length = 110
Score = 53.5 bits (127), Expect = 1e-07
Identities = 29/93 (31%), Positives = 45/93 (48%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P A DI ++LS+VGIE + + + ++ ++ ++I ELIA G +K+S+VP+ G
Sbjct: 18 PSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAG 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 337
DMGFGLFD
Sbjct: 78 GAAGAEATSAAEEAKEEEAAEESDEDMGFGLFD 110
>sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 (Minor allergen Fus c 1)
Length = 109
Score = 53.5 bits (127), Expect = 1e-07
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P A D+ +L+SVGI+ D ++ +++ ++ +DI +LIA+G +K++SVP+GG
Sbjct: 18 PSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKLASVPSGG-AGGASGG 76
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 337
DMGFGLFD
Sbjct: 77 AAAAGGAAEEAKEEEKEEEKEESDEDMGFGLFD 109
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 52.8 bits (125), Expect = 2e-07
Identities = 29/93 (31%), Positives = 45/93 (48%)
Frame = +2
Query: 59 PEAEDIGTILSSVGIECDTNKAKEVVQAIDCRDINELIADGLKKISSVPTGGXXXXXXXX 238
P D+ IL SVGIE + ++ +V+ + ++++E+IA+G KK++SVP+GG
Sbjct: 18 PSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVPSGGGVAAAAPA 77
Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 337
DMGFGLFD
Sbjct: 78 AGGGGADPAEAKEEKKEEPEEESDDDMGFGLFD 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,584,336
Number of Sequences: 369166
Number of extensions: 356212
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)