Planaria EST Database

DrC_00667

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00667
         (1163 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K3B1|FBSP1_MOUSE  F-box/SPRY-domain protein 1 (F-box on...   134   7e-31
sp|Q9V6L9|FBSP1_DROME  F-box/SPRY-domain protein 1                133   1e-30
sp|Q18223|FBSP1_CAEEL  F-box/SPRY-domain protein 1 (F-box sy...   116   1e-25
sp|Q9BYB4|GNB1L_HUMAN  Guanine nucleotide-binding protein be...    32   2.7  
sp|P21980|TGM2_HUMAN  Protein-glutamine gamma-glutamyltransf...    32   3.5  
sp|P54232|VEF_GVHA  Viral-enhancing factor (VEF) (Enhancin) ...    32   4.6  
sp|P15533|TRI30_MOUSE  Tripartite motif protein 30 (Down reg...    31   6.0  
sp|P57607|DEOB_BUCAI  Phosphopentomutase (Phosphodeoxyribomu...    31   6.0  
sp|O94913|PCF11_HUMAN  Pre-mRNA cleavage complex II protein ...    31   6.0  
sp|Q91YY2|B4GT3_MOUSE  Beta-1,4-galactosyltransferase 3 (Bet...    31   7.8  

>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
          Length = 286

 Score =  134 bits (336), Expect = 7e-31
 Identities = 73/185 (39%), Positives = 108/185 (58%)
 Frame = +1

Query: 301 QNTWSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTH 480
           Q+ +S+   S N+  +  N +T HRNP+A STDG R   G+SEG H WE+ W   + GT 
Sbjct: 111 QHAFSTNDCSRNV-YIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL-GTV 168

Query: 481 AVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRK 660
           AV+G++T++  +Q   YV+L+G DD+SWGW++V+   +H  E         +P       
Sbjct: 169 AVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNG-----SFPQ------ 217

Query: 661 MCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVE 840
            C+    ++I  RI +ILDM   +L+F  G EFLG+   GL    LYP VSAV+G+ +V 
Sbjct: 218 -CNNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVT 276

Query: 841 IKYFG 855
           + Y G
Sbjct: 277 LVYLG 281

>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
          Length = 255

 Score =  133 bits (334), Expect = 1e-30
 Identities = 75/184 (40%), Positives = 104/184 (56%)
 Frame = +1

Query: 304 NTWSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHA 483
           + WS    S N+ + P N +T HRNPVA STD  RG  G+  G H WE+ W   + GT A
Sbjct: 81  HAWSPNDCSRNVYIKP-NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPL-GTVA 138

Query: 484 VVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKM 663
           V+G+ST++  LQ   YV+L+G DD+SWGW++V    +H  +         YP +    K 
Sbjct: 139 VIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQG-----SYPLLNNAPK- 192

Query: 664 CSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEI 843
                 +++  RI +ILD    +LSF    EFLG+   GL  K LYPTVSAV+G+ +V +
Sbjct: 193 ------YQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSM 246

Query: 844 KYFG 855
            Y G
Sbjct: 247 VYLG 250

>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
          Length = 332

 Score =  116 bits (291), Expect = 1e-25
 Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
 Frame = +1

Query: 310 WSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINW--PLTMRGTHA 483
           W++   S N N + +N +T HR PVA STDG+RG RG S+G+H ++I W  PL   GT A
Sbjct: 160 WNTSDISRN-NYIRTNGFTVHRQPVAQSTDGVRGKRGISKGVHAFDITWDGPL---GTVA 215

Query: 484 VVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVH-GKETGNPICYEKYPDVKKIRK 660
           VVG++T+   L    YV+L+G DD+SWGW++V+ + +H G + G       YP +    K
Sbjct: 216 VVGIATKHAALHCVGYVALLGSDDQSWGWNLVDNVLMHNGAQLG------VYPKMNNPPK 269

Query: 661 MCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVE 840
                  +++  +I LI+D       F   +EFLGI    +    LYP V AV+G+ +V 
Sbjct: 270 -------YEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVT 322

Query: 841 IKYFG 855
           + Y G
Sbjct: 323 MVYVG 327

>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein beta subunit-like protein 1 (G
           protein beta subunit-like protein 1) (WD40 repeat
           containing protein deleted in VCFS) (WDVCF protein)
           (DGCRK3)
          Length = 327

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
 Frame = +1

Query: 370 HRNPV------ANSTDGIRGNRGYSEGIHIWEINWP--LTMRGTHAVVGVSTEKCQLQQD 525
           H  PV      +    GI G+ G  + + +W ++W   L +RGTH +      +  ++ D
Sbjct: 207 HEEPVMDLDFDSQKARGISGSAG--KALAVWSLDWQQALQVRGTHELTNPGIAEVTIRPD 264

Query: 526 RYVSLVGIDDESWGWDIVNRIKVHGKETGNPI 621
           R +          GWD  +RI+V    T  P+
Sbjct: 265 RKILATA------GWD--HRIRVFHWRTMQPL 288

>sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase (Tissue
           transglutaminase) (TGase C) (TGC) (TG(C))
           (Tranglutaminase 2) (TGase-H)
          Length = 687

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 256 PFMFEESNVDISEQEQNTWSSVHKSININLL 348
           PF+F E N D+ +  Q    SVHKSIN +L+
Sbjct: 391 PFVFAEVNADVVDWIQQDDGSVHKSINRSLI 421

>sp|P54232|VEF_GVHA Viral-enhancing factor (VEF) (Enhancin) (104 kDa glycoprotein)
           (Synergistic factor)
          Length = 902

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +1

Query: 127 KKNLEKKYVDWIMKRFVFHRL-----SLITEINLPNSNETEVFISH-WIPFMFEESNVDI 288
           K  +   +  W + R V  RL     +   EINL N    E+   H  +PF      VD 
Sbjct: 41  KFRVRADFAKWGITRPVIVRLLNNNRNTEREINLTNDQWIEMEHEHECVPF------VDW 94

Query: 289 SEQEQNTWSSVHKSININLLPSNPYTFHRNPVAN 390
              E+NT + VH  I+   +P   Y F+  PV N
Sbjct: 95  PVGEKNTMAEVHFEIDGPHIPLPVYVFNTRPVEN 128

>sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down regulatory protein of interleukin
           2 receptor)
          Length = 496

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
 Frame = +1

Query: 400 GIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIV 579
           G+ G    S G H WE++     R    ++G++  KC   Q      +GI       ++ 
Sbjct: 338 GVLGYPALSSGKHYWEVD---ISRSDAWLLGLNDGKCAQPQLHSKEEMGIKK-----NLH 389

Query: 580 NRIK---VHGKETGNPICYEKYPDVKKIRKMCSMGKSFKI--------PSRIYLILDMYQ 726
           ++IK   +   + G  +   K P V K    CS+  +  I        PSR+ + LD   
Sbjct: 390 SQIKQNVLFQPKCGYWVIGMKNPSVYKAFDECSITHNSSILVISLPDRPSRVGVFLDRKA 449

Query: 727 GSLSF 741
           G+LSF
Sbjct: 450 GTLSF 454

>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
          Length = 407

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 565 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 735
           G DI++R+     +T  PI Y     V +I    +   +   +K+   +  ILD Y   +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208

Query: 736 SFVIGNEFLG 765
           + VI   F+G
Sbjct: 209 ARVIARPFIG 218

>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
          Length = 1654

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 496  STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 636
            S E CQ Q ++Y      D+E   W + N I+V GK   +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581

>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
           (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes:
           N-acetyllactosamine synthase (Nal synthetase);
           Beta-N-acetylglucosaminylglycopeptide
           beta-1,4-galactosyltransferase ;
           Beta-N-acetylglucosaminyl-glycolipid
           beta-1,4-galactosyltransferase ]
          Length = 395

 Score = 30.8 bits (68), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +1

Query: 514 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 618
           L  D+Y+ + G  +E WGW     DI  R+++ G +   P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,272,539
Number of Sequences: 369166
Number of extensions: 2818709
Number of successful extensions: 6797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6789
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 13107781500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00667

  1. Dr_sW_007_A17
  2. Dr_sW_002_M11
  3. Dr_sW_017_I09
  4. Dr_sW_013_M07
  5. Dr_sW_009_A15
  6. Dr_sW_019_B04
  7. Dr_sW_021_F15
  8. Dr_sW_001_P20
  9. Dr_sW_009_N04