Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_F15
(672 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 84 4e-16
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 82 1e-15
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 62 1e-09
sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomu... 31 2.6
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 2.6
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 31 3.3
sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Bet... 31 3.3
sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Bet... 31 3.3
sp|Q6P768|B4GT3_RAT Beta-1,4-galactosyltransferase 3 (Beta-... 31 3.3
sp|Q80WN8|B4GT3_CRIGR Beta-1,4-galactosyltransferase 3 (Bet... 31 3.3
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 83.6 bits (205), Expect = 4e-16
Identities = 44/121 (36%), Positives = 68/121 (56%)
Frame = +2
Query: 2 VSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKMCSM 181
++T++ +Q YV+L+G DD+SWGW++V+ +H E +P C+
Sbjct: 173 IATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNG-----SFPQ-------CNN 220
Query: 182 GKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYF 361
++I RI +ILDM +L+F G EFLG+ GL LYP VSAV+G+ +V + Y
Sbjct: 221 APKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVTLVYL 280
Query: 362 G 364
G
Sbjct: 281 G 281
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 82.0 bits (201), Expect = 1e-15
Identities = 46/121 (38%), Positives = 67/121 (55%)
Frame = +2
Query: 2 VSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKMCSM 181
+ST++ LQ YV+L+G DD+SWGW++V +H + YP + K
Sbjct: 142 ISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQG-----SYPLLNNAPK---- 192
Query: 182 GKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYF 361
+++ RI +ILD +LSF EFLG+ GL K LYPTVSAV+G+ +V + Y
Sbjct: 193 ---YQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYL 249
Query: 362 G 364
G
Sbjct: 250 G 250
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 62.4 bits (150), Expect = 1e-09
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +2
Query: 2 VSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVH-GKETGNPICYEKYPDVKKIRKMCS 178
++T+ L YV+L+G DD+SWGW++V+ + +H G + G YP + K
Sbjct: 219 IATKHAALHCVGYVALLGSDDQSWGWNLVDNVLMHNGAQLG------VYPKMNNPPK--- 269
Query: 179 MGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKY 358
+++ +I LI+D F +EFLGI + LYP V AV+G+ +V + Y
Sbjct: 270 ----YEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVTMVY 325
Query: 359 FG 364
G
Sbjct: 326 VG 327
>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
Length = 407
Score = 31.2 bits (69), Expect = 2.6
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 74 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 244
G DI++R+ +T PI Y V +I + + +K+ + ILD Y +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208
Query: 245 SFVIGNEFLG 274
+ VI F+G
Sbjct: 209 ARVIARPFIG 218
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 2.6
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 5 STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 145
S E CQ Q ++Y D+E W + N I+V GK +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 23 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 127
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
>sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 23 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 127
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
>sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 23 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 127
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
>sp|Q6P768|B4GT3_RAT Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 23 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 127
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
>sp|Q80WN8|B4GT3_CRIGR Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 23 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 127
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,635,726
Number of Sequences: 369166
Number of extensions: 1528226
Number of successful extensions: 3480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3477
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)