Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_I09
(924 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 134 5e-31
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 133 8e-31
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 116 8e-26
sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein be... 32 1.9
sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransf... 32 2.5
sp|P54232|VEF_GVHA Viral-enhancing factor (VEF) (Enhancin) ... 32 3.3
sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down reg... 31 4.3
sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomu... 31 4.3
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 4.3
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 31 5.6
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 134 bits (336), Expect = 5e-31
Identities = 73/185 (39%), Positives = 108/185 (58%)
Frame = +1
Query: 301 QNTWSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTH 480
Q+ +S+ S N+ + N +T HRNP+A STDG R G+SEG H WE+ W + GT
Sbjct: 111 QHAFSTNDCSRNV-YIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL-GTV 168
Query: 481 AVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRK 660
AV+G++T++ +Q YV+L+G DD+SWGW++V+ +H E +P
Sbjct: 169 AVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNG-----SFPQ------ 217
Query: 661 MCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVE 840
C+ ++I RI +ILDM +L+F G EFLG+ GL LYP VSAV+G+ +V
Sbjct: 218 -CNNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVT 276
Query: 841 IKYFG 855
+ Y G
Sbjct: 277 LVYLG 281
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 133 bits (334), Expect = 8e-31
Identities = 75/184 (40%), Positives = 104/184 (56%)
Frame = +1
Query: 304 NTWSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHA 483
+ WS S N+ + P N +T HRNPVA STD RG G+ G H WE+ W + GT A
Sbjct: 81 HAWSPNDCSRNVYIKP-NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPL-GTVA 138
Query: 484 VVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKM 663
V+G+ST++ LQ YV+L+G DD+SWGW++V +H + YP + K
Sbjct: 139 VIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQG-----SYPLLNNAPK- 192
Query: 664 CSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEI 843
+++ RI +ILD +LSF EFLG+ GL K LYPTVSAV+G+ +V +
Sbjct: 193 ------YQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSM 246
Query: 844 KYFG 855
Y G
Sbjct: 247 VYLG 250
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 116 bits (291), Expect = 8e-26
Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
Frame = +1
Query: 310 WSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINW--PLTMRGTHA 483
W++ S N N + +N +T HR PVA STDG+RG RG S+G+H ++I W PL GT A
Sbjct: 160 WNTSDISRN-NYIRTNGFTVHRQPVAQSTDGVRGKRGISKGVHAFDITWDGPL---GTVA 215
Query: 484 VVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVH-GKETGNPICYEKYPDVKKIRK 660
VVG++T+ L YV+L+G DD+SWGW++V+ + +H G + G YP + K
Sbjct: 216 VVGIATKHAALHCVGYVALLGSDDQSWGWNLVDNVLMHNGAQLG------VYPKMNNPPK 269
Query: 661 MCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVE 840
+++ +I LI+D F +EFLGI + LYP V AV+G+ +V
Sbjct: 270 -------YEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVT 322
Query: 841 IKYFG 855
+ Y G
Sbjct: 323 MVYVG 327
>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein beta subunit-like protein 1 (G
protein beta subunit-like protein 1) (WD40 repeat
containing protein deleted in VCFS) (WDVCF protein)
(DGCRK3)
Length = 327
Score = 32.3 bits (72), Expect = 1.9
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +1
Query: 370 HRNPV------ANSTDGIRGNRGYSEGIHIWEINWP--LTMRGTHAVVGVSTEKCQLQQD 525
H PV + GI G+ G + + +W ++W L +RGTH + + ++ D
Sbjct: 207 HEEPVMDLDFDSQKARGISGSAG--KALAVWSLDWQQALQVRGTHELTNPGIAEVTIRPD 264
Query: 526 RYVSLVGIDDESWGWDIVNRIKVHGKETGNPI 621
R + GWD +RI+V T P+
Sbjct: 265 RKILATA------GWD--HRIRVFHWRTMQPL 288
>sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase (Tissue
transglutaminase) (TGase C) (TGC) (TG(C))
(Tranglutaminase 2) (TGase-H)
Length = 687
Score = 32.0 bits (71), Expect = 2.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 256 PFMFEESNVDISEQEQNTWSSVHKSININLL 348
PF+F E N D+ + Q SVHKSIN +L+
Sbjct: 391 PFVFAEVNADVVDWIQQDDGSVHKSINRSLI 421
>sp|P54232|VEF_GVHA Viral-enhancing factor (VEF) (Enhancin) (104 kDa glycoprotein)
(Synergistic factor)
Length = 902
Score = 31.6 bits (70), Expect = 3.3
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 127 KKNLEKKYVDWIMKRFVFHRL-----SLITEINLPNSNETEVFISH-WIPFMFEESNVDI 288
K + + W + R V RL + EINL N E+ H +PF VD
Sbjct: 41 KFRVRADFAKWGITRPVIVRLLNNNRNTEREINLTNDQWIEMEHEHECVPF------VDW 94
Query: 289 SEQEQNTWSSVHKSININLLPSNPYTFHRNPVAN 390
E+NT + VH I+ +P Y F+ PV N
Sbjct: 95 PVGEKNTMAEVHFEIDGPHIPLPVYVFNTRPVEN 128
>sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down regulatory protein of interleukin
2 receptor)
Length = 496
Score = 31.2 bits (69), Expect = 4.3
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +1
Query: 400 GIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIV 579
G+ G S G H WE++ R ++G++ KC Q +GI ++
Sbjct: 338 GVLGYPALSSGKHYWEVD---ISRSDAWLLGLNDGKCAQPQLHSKEEMGIKK-----NLH 389
Query: 580 NRIK---VHGKETGNPICYEKYPDVKKIRKMCSMGKSFKI--------PSRIYLILDMYQ 726
++IK + + G + K P V K CS+ + I PSR+ + LD
Sbjct: 390 SQIKQNVLFQPKCGYWVIGMKNPSVYKAFDECSITHNSSILVISLPDRPSRVGVFLDRKA 449
Query: 727 GSLSF 741
G+LSF
Sbjct: 450 GTLSF 454
>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
Length = 407
Score = 31.2 bits (69), Expect = 4.3
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 565 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 735
G DI++R+ +T PI Y V +I + + +K+ + ILD Y +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208
Query: 736 SFVIGNEFLG 765
+ VI F+G
Sbjct: 209 ARVIARPFIG 218
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 4.3
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 496 STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 636
S E CQ Q ++Y D+E W + N I+V GK +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 514 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 618
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,550,296
Number of Sequences: 369166
Number of extensions: 2306206
Number of successful extensions: 5777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5769
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)