Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P20
(709 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 93 6e-19
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 92 2e-18
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 72 1e-12
sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomu... 31 2.8
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 2.8
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 31 3.7
sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Bet... 31 3.7
sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Bet... 31 3.7
sp|Q6P768|B4GT3_RAT Beta-1,4-galactosyltransferase 3 (Beta-... 31 3.7
sp|Q80WN8|B4GT3_CRIGR Beta-1,4-galactosyltransferase 3 (Bet... 31 3.7
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 93.2 bits (230), Expect = 6e-19
Identities = 49/128 (38%), Positives = 74/128 (57%)
Frame = +3
Query: 18 GTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKK 197
GT AV+G++T++ +Q YV+L+G DD+SWGW++V+ +H E +P
Sbjct: 166 GTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNG-----SFPQ--- 217
Query: 198 IRKMCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHC 377
C+ ++I RI +ILDM +L+F G EFLG+ GL LYP VSAV+G+
Sbjct: 218 ----CNNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNT 273
Query: 378 QVEIKYFG 401
+V + Y G
Sbjct: 274 EVTLVYLG 281
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 91.7 bits (226), Expect = 2e-18
Identities = 51/128 (39%), Positives = 73/128 (57%)
Frame = +3
Query: 18 GTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKK 197
GT AV+G+ST++ LQ YV+L+G DD+SWGW++V +H + YP +
Sbjct: 135 GTVAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQG-----SYPLLNN 189
Query: 198 IRKMCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHC 377
K +++ RI +ILD +LSF EFLG+ GL K LYPTVSAV+G+
Sbjct: 190 APK-------YQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNT 242
Query: 378 QVEIKYFG 401
+V + Y G
Sbjct: 243 EVSMVYLG 250
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 72.4 bits (176), Expect = 1e-12
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Frame = +3
Query: 18 GTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVH-GKETGNPICYEKYPDVK 194
GT AVVG++T+ L YV+L+G DD+SWGW++V+ + +H G + G YP +
Sbjct: 212 GTVAVVGIATKHAALHCVGYVALLGSDDQSWGWNLVDNVLMHNGAQLG------VYPKMN 265
Query: 195 KIRKMCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGH 374
K +++ +I LI+D F +EFLGI + LYP V AV+G+
Sbjct: 266 NPPK-------YEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGN 318
Query: 375 CQVEIKYFG 401
+V + Y G
Sbjct: 319 TEVTMVYVG 327
>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
Length = 407
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 111 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 281
G DI++R+ +T PI Y V +I + + +K+ + ILD Y +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208
Query: 282 SFVIGNEFLG 311
+ VI F+G
Sbjct: 209 ARVIARPFIG 218
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 42 STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 182
S E CQ Q ++Y D+E W + N I+V GK +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +3
Query: 60 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 164
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
>sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +3
Query: 60 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 164
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
>sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +3
Query: 60 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 164
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
>sp|Q6P768|B4GT3_RAT Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +3
Query: 60 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 164
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
>sp|Q80WN8|B4GT3_CRIGR Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +3
Query: 60 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 164
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,728,246
Number of Sequences: 369166
Number of extensions: 1648790
Number of successful extensions: 3492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3489
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)