Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M11
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 117 3e-26
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 117 5e-26
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 103 7e-22
sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein be... 32 1.6
sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransf... 32 2.0
sp|P54232|VEF_GVHA Viral-enhancing factor (VEF) (Enhancin) ... 32 2.7
sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down reg... 31 3.5
sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomu... 31 3.5
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 3.5
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 31 4.6
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 117 bits (294), Expect = 3e-26
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Frame = +1
Query: 298 QNTWSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINW--PLTMRG 471
Q+ +S+ S N+ + N +T HRNP+A STDG R G+SEG H WE+ W PL G
Sbjct: 111 QHAFSTNDCSRNV-YIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL---G 166
Query: 472 THAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKI 651
T AV+G++T++ +Q YV+L+G DD+SWGW++V+ +H E +P
Sbjct: 167 TVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNG-----SFP----- 216
Query: 652 RKMCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYP 801
C+ ++I RI +ILDM +L+F G EFLG+ GL LYP
Sbjct: 217 --QCNNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYP 264
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 117 bits (292), Expect = 5e-26
Identities = 67/168 (39%), Positives = 92/168 (54%)
Frame = +1
Query: 301 NTWSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHA 480
+ WS S N+ + P N +T HRNPVA STD RG G+ G H WE+ W + GT A
Sbjct: 81 HAWSPNDCSRNVYIKP-NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPL-GTVA 138
Query: 481 VVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKM 660
V+G+ST++ LQ YV+L+G DD+SWGW++V +H N YP +
Sbjct: 139 VIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLH-----NGDMQGSYP-------L 186
Query: 661 CSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPT 804
+ +++ RI +ILD +LSF EFLG+ GL K LYPT
Sbjct: 187 LNNAPKYQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPT 234
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 103 bits (256), Expect = 7e-22
Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Frame = +1
Query: 307 WSSVHKSININLLPSNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINW--PLTMRGTHA 480
W++ S N N + +N +T HR PVA STDG+RG RG S+G+H ++I W PL GT A
Sbjct: 160 WNTSDISRN-NYIRTNGFTVHRQPVAQSTDGVRGKRGISKGVHAFDITWDGPL---GTVA 215
Query: 481 VVGVSTEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVH-GKETGNPICYEKYPDVKKIRK 657
VVG++T+ L YV+L+G DD+SWGW++V+ + +H G + G YP + K
Sbjct: 216 VVGIATKHAALHCVGYVALLGSDDQSWGWNLVDNVLMHNGAQLG------VYPKMNNPPK 269
Query: 658 MCSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYP 801
+++ +I LI+D F +EFLGI + LYP
Sbjct: 270 -------YEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYP 310
>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein beta subunit-like protein 1 (G
protein beta subunit-like protein 1) (WD40 repeat
containing protein deleted in VCFS) (WDVCF protein)
(DGCRK3)
Length = 327
Score = 32.3 bits (72), Expect = 1.6
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +1
Query: 367 HRNPV------ANSTDGIRGNRGYSEGIHIWEINWP--LTMRGTHAVVGVSTEKCQLQQD 522
H PV + GI G+ G + + +W ++W L +RGTH + + ++ D
Sbjct: 207 HEEPVMDLDFDSQKARGISGSAG--KALAVWSLDWQQALQVRGTHELTNPGIAEVTIRPD 264
Query: 523 RYVSLVGIDDESWGWDIVNRIKVHGKETGNPI 618
R + GWD +RI+V T P+
Sbjct: 265 RKILATA------GWD--HRIRVFHWRTMQPL 288
>sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase (Tissue
transglutaminase) (TGase C) (TGC) (TG(C))
(Tranglutaminase 2) (TGase-H)
Length = 687
Score = 32.0 bits (71), Expect = 2.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 253 PFMFEESNVDISEQEQNTWSSVHKSININLL 345
PF+F E N D+ + Q SVHKSIN +L+
Sbjct: 391 PFVFAEVNADVVDWIQQDDGSVHKSINRSLI 421
>sp|P54232|VEF_GVHA Viral-enhancing factor (VEF) (Enhancin) (104 kDa glycoprotein)
(Synergistic factor)
Length = 902
Score = 31.6 bits (70), Expect = 2.7
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 124 KKNLEKKYVDWIMKRFVFHRL-----SLITEINLPNSNETEVFISH-WIPFMFEESNVDI 285
K + + W + R V RL + EINL N E+ H +PF VD
Sbjct: 41 KFRVRADFAKWGITRPVIVRLLNNNRNTEREINLTNDQWIEMEHEHECVPF------VDW 94
Query: 286 SEQEQNTWSSVHKSININLLPSNPYTFHRNPVAN 387
E+NT + VH I+ +P Y F+ PV N
Sbjct: 95 PVGEKNTMAEVHFEIDGPHIPLPVYVFNTRPVEN 128
>sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down regulatory protein of interleukin
2 receptor)
Length = 496
Score = 31.2 bits (69), Expect = 3.5
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +1
Query: 397 GIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIV 576
G+ G S G H WE++ R ++G++ KC Q +GI ++
Sbjct: 338 GVLGYPALSSGKHYWEVD---ISRSDAWLLGLNDGKCAQPQLHSKEEMGIKK-----NLH 389
Query: 577 NRIK---VHGKETGNPICYEKYPDVKKIRKMCSMGKSFKI--------PSRIYLILDMYQ 723
++IK + + G + K P V K CS+ + I PSR+ + LD
Sbjct: 390 SQIKQNVLFQPKCGYWVIGMKNPSVYKAFDECSITHNSSILVISLPDRPSRVGVFLDRKA 449
Query: 724 GSLSF 738
G+LSF
Sbjct: 450 GTLSF 454
>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
Length = 407
Score = 31.2 bits (69), Expect = 3.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 562 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 732
G DI++R+ +T PI Y V +I + + +K+ + ILD Y +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208
Query: 733 SFVIGNEFLG 762
+ VI F+G
Sbjct: 209 ARVIARPFIG 218
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 3.5
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 493 STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 633
S E CQ Q ++Y D+E W + N I+V GK +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 511 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 615
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,684,466
Number of Sequences: 369166
Number of extensions: 2017367
Number of successful extensions: 5206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5198
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)