Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A15
(814 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 132 9e-31
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 129 1e-29
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 114 4e-25
sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein be... 32 1.6
sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down reg... 31 3.5
sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomu... 31 3.5
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 3.5
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 31 4.6
sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Bet... 31 4.6
sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Bet... 31 4.6
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 132 bits (333), Expect = 9e-31
Identities = 69/167 (41%), Positives = 99/167 (59%)
Frame = +2
Query: 8 NPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYV 187
N +T HRNP+A STDG R G+SEG H WE+ W + GT AV+G++T++ +Q YV
Sbjct: 128 NGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL-GTVAVIGIATKRAPMQCQGYV 186
Query: 188 SLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKMCSMGKSFKIPSRIYLIL 367
+L+G DD+SWGW++V+ +H E +P C+ ++I RI +IL
Sbjct: 187 ALLGSDDQSWGWNLVDNNLLHNGEVNG-----SFPQ-------CNNAPKYQIGERIRVIL 234
Query: 368 DMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 508
DM +L+F G EFLG+ GL LYP VSAV+G+ +V + Y G
Sbjct: 235 DMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVTLVYLG 281
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 129 bits (323), Expect = 1e-29
Identities = 70/167 (41%), Positives = 96/167 (57%)
Frame = +2
Query: 8 NPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYV 187
N +T HRNPVA STD RG G+ G H WE+ W + GT AV+G+ST++ LQ YV
Sbjct: 97 NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPL-GTVAVIGISTKEAALQCHGYV 155
Query: 188 SLVGIDDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKMCSMGKSFKIPSRIYLIL 367
+L+G DD+SWGW++V +H + YP + K +++ RI +IL
Sbjct: 156 ALLGSDDQSWGWNLVENHLLHNGDMQG-----SYPLLNNAPK-------YQVGERIRVIL 203
Query: 368 DMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 508
D +LSF EFLG+ GL K LYPTVSAV+G+ +V + Y G
Sbjct: 204 DCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG 250
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 114 bits (284), Expect = 4e-25
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 3/171 (1%)
Frame = +2
Query: 5 SNPYTFHRNPVANSTDGIRGNRGYSEGIHIWEINW--PLTMRGTHAVVGVSTEKCQLQQD 178
+N +T HR PVA STDG+RG RG S+G+H ++I W PL GT AVVG++T+ L
Sbjct: 173 TNGFTVHRQPVAQSTDGVRGKRGISKGVHAFDITWDGPL---GTVAVVGIATKHAALHCV 229
Query: 179 RYVSLVGIDDESWGWDIVNRIKVH-GKETGNPICYEKYPDVKKIRKMCSMGKSFKIPSRI 355
YV+L+G DD+SWGW++V+ + +H G + G YP + K +++ +I
Sbjct: 230 GYVALLGSDDQSWGWNLVDNVLMHNGAQLG------VYPKMNNPPK-------YEVGDKI 276
Query: 356 YLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 508
LI+D F +EFLGI + LYP V AV+G+ +V + Y G
Sbjct: 277 RLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVTMVYVG 327
>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein beta subunit-like protein 1 (G
protein beta subunit-like protein 1) (WD40 repeat
containing protein deleted in VCFS) (WDVCF protein)
(DGCRK3)
Length = 327
Score = 32.3 bits (72), Expect = 1.6
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +2
Query: 23 HRNPV------ANSTDGIRGNRGYSEGIHIWEINWP--LTMRGTHAVVGVSTEKCQLQQD 178
H PV + GI G+ G + + +W ++W L +RGTH + + ++ D
Sbjct: 207 HEEPVMDLDFDSQKARGISGSAG--KALAVWSLDWQQALQVRGTHELTNPGIAEVTIRPD 264
Query: 179 RYVSLVGIDDESWGWDIVNRIKVHGKETGNPI 274
R + GWD +RI+V T P+
Sbjct: 265 RKILATA------GWD--HRIRVFHWRTMQPL 288
>sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down regulatory protein of interleukin
2 receptor)
Length = 496
Score = 31.2 bits (69), Expect = 3.5
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +2
Query: 53 GIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIV 232
G+ G S G H WE++ R ++G++ KC Q +GI ++
Sbjct: 338 GVLGYPALSSGKHYWEVD---ISRSDAWLLGLNDGKCAQPQLHSKEEMGIKK-----NLH 389
Query: 233 NRIK---VHGKETGNPICYEKYPDVKKIRKMCSMGKSFKI--------PSRIYLILDMYQ 379
++IK + + G + K P V K CS+ + I PSR+ + LD
Sbjct: 390 SQIKQNVLFQPKCGYWVIGMKNPSVYKAFDECSITHNSSILVISLPDRPSRVGVFLDRKA 449
Query: 380 GSLSF 394
G+LSF
Sbjct: 450 GTLSF 454
>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
Length = 407
Score = 31.2 bits (69), Expect = 3.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 218 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 388
G DI++R+ +T PI Y V +I + + +K+ + ILD Y +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208
Query: 389 SFVIGNEFLG 418
+ VI F+G
Sbjct: 209 ARVIARPFIG 218
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 3.5
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 149 STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 289
S E CQ Q ++Y D+E W + N I+V GK +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 167 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 271
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
>sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 167 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 271
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
>sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 167 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 271
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,103,245
Number of Sequences: 369166
Number of extensions: 2046981
Number of successful extensions: 4509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4503
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)