Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N04
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 56 5e-08
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 55 1e-07
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 37 0.033
sp|Q6PSE2|MATK_AMPBR Maturase K (Intron maturase) 30 4.0
sp|P28495|CAPZA_YEAST F-actin capping protein alpha subunit 29 6.8
sp|Q89AV6|SYGA_BUCBP Glycyl-tRNA synthetase alpha chain (Gl... 29 6.8
sp|P31788|POLG_HPAVT Genome polyprotein [Contains: Coat pro... 29 8.9
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 56.2 bits (134), Expect = 5e-08
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +1
Query: 55 CSMGKSFKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEI 234
C+ ++I RI +ILDM +L+F G EFLG+ GL LYP VSAV+G+ +V +
Sbjct: 218 CNNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVTL 277
Query: 235 KYFG 246
Y G
Sbjct: 278 VYLG 281
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 55.1 bits (131), Expect = 1e-07
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +1
Query: 73 FKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 246
+++ RI +ILD +LSF EFLG+ GL K LYPTVSAV+G+ +V + Y G
Sbjct: 193 YQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG 250
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 37.0 bits (84), Expect = 0.033
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 73 FKIPSRIYLILDMYQGSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 246
+++ +I LI+D F +EFLGI + LYP V AV+G+ +V + Y G
Sbjct: 270 YEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVTMVYVG 327
>sp|Q6PSE2|MATK_AMPBR Maturase K (Intron maturase)
Length = 507
Score = 30.0 bits (66), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 51 NVFNGKIFQNSFKNLSNFRYVSRFIVICHR**ISWHLSHGT*RKNSL 191
NVF I + + NLS+F + RF+ IC +H +G+ +K SL
Sbjct: 381 NVFGHPISKPVWANLSDFDIIDRFLRICRN---FYHYYNGSAKKKSL 424
>sp|P28495|CAPZA_YEAST F-actin capping protein alpha subunit
Length = 268
Score = 29.3 bits (64), Expect = 6.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 331 ELRGQQGRFQTVTEINSSTNVYDAIMNQNVPNCI 432
ELR +T NS + DAI N NV NCI
Sbjct: 21 ELREVYDDLIKITSENSKNTILDAIENYNVQNCI 54
>sp|Q89AV6|SYGA_BUCBP Glycyl-tRNA synthetase alpha chain (Glycine--tRNA ligase alpha
chain) (GlyRS)
Length = 300
Score = 29.3 bits (64), Expect = 6.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 373 INSSTNVYDAIMNQNVPNCI---KDLLLNNE 456
I + +N+YD I NQ++ N I DL LNNE
Sbjct: 181 IQNKSNIYDVIWNQDMNNNIITYGDLFLNNE 211
>sp|P31788|POLG_HPAVT Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A)]
Length = 839
Score = 28.9 bits (63), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 228 YLTMTPYSTNCRIKSFSFKSHVTNAKKFITY 136
+++ TPY NC IKS K T +K I Y
Sbjct: 420 WISDTPYRVNCYIKSSHQKGEYTAIEKLIVY 450
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,369,014
Number of Sequences: 369166
Number of extensions: 1147413
Number of successful extensions: 2722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2722
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)