Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B04
(794 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 128 2e-29
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 124 3e-28
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 109 1e-23
sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein be... 32 1.5
sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down reg... 31 3.4
sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomu... 31 3.4
sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein ... 31 3.4
sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Bet... 31 4.4
sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Bet... 31 4.4
sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Bet... 31 4.4
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 128 bits (321), Expect = 2e-29
Identities = 67/162 (41%), Positives = 96/162 (59%)
Frame = +1
Query: 1 HRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGI 180
HRNP+A STDG R G+SEG H WE+ W + GT AV+G++T++ +Q YV+L+G
Sbjct: 133 HRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL-GTVAVIGIATKRAPMQCQGYVALLGS 191
Query: 181 DDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKMCSMGKSFKIPSRIYLILDMYQG 360
DD+SWGW++V+ +H E +P C+ ++I RI +ILDM
Sbjct: 192 DDQSWGWNLVDNNLLHNGEVNG-----SFPQ-------CNNAPKYQIGERIRVILDMEDK 239
Query: 361 SLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 486
+L+F G EFLG+ GL LYP VSAV+G+ +V + Y G
Sbjct: 240 TLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVTLVYLG 281
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 124 bits (311), Expect = 3e-28
Identities = 68/162 (41%), Positives = 93/162 (57%)
Frame = +1
Query: 1 HRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGI 180
HRNPVA STD RG G+ G H WE+ W + GT AV+G+ST++ LQ YV+L+G
Sbjct: 102 HRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPL-GTVAVIGISTKEAALQCHGYVALLGS 160
Query: 181 DDESWGWDIVNRIKVHGKETGNPICYEKYPDVKKIRKMCSMGKSFKIPSRIYLILDMYQG 360
DD+SWGW++V +H + YP + K +++ RI +ILD
Sbjct: 161 DDQSWGWNLVENHLLHNGDMQG-----SYPLLNNAPK-------YQVGERIRVILDCEDN 208
Query: 361 SLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 486
+LSF EFLG+ GL K LYPTVSAV+G+ +V + Y G
Sbjct: 209 TLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG 250
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 109 bits (272), Expect = 1e-23
Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 HRNPVANSTDGIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGI 180
HR PVA STDG+RG RG S+G+H ++I W + GT AVVG++T+ L YV+L+G
Sbjct: 179 HRQPVAQSTDGVRGKRGISKGVHAFDITWDGPL-GTVAVVGIATKHAALHCVGYVALLGS 237
Query: 181 DDESWGWDIVNRIKVH-GKETGNPICYEKYPDVKKIRKMCSMGKSFKIPSRIYLILDMYQ 357
DD+SWGW++V+ + +H G + G YP + K +++ +I LI+D
Sbjct: 238 DDQSWGWNLVDNVLMHNGAQLG------VYPKMNNPPK-------YEVGDKIRLIIDCDT 284
Query: 358 GSLSFVIGNEFLGICHMGLKGKTLYPTVSAVWGHCQVEIKYFG 486
F +EFLGI + LYP V AV+G+ +V + Y G
Sbjct: 285 HVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVTMVYVG 327
>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein beta subunit-like protein 1 (G
protein beta subunit-like protein 1) (WD40 repeat
containing protein deleted in VCFS) (WDVCF protein)
(DGCRK3)
Length = 327
Score = 32.3 bits (72), Expect = 1.5
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +1
Query: 1 HRNPV------ANSTDGIRGNRGYSEGIHIWEINWP--LTMRGTHAVVGVSTEKCQLQQD 156
H PV + GI G+ G + + +W ++W L +RGTH + + ++ D
Sbjct: 207 HEEPVMDLDFDSQKARGISGSAG--KALAVWSLDWQQALQVRGTHELTNPGIAEVTIRPD 264
Query: 157 RYVSLVGIDDESWGWDIVNRIKVHGKETGNPI 252
R + GWD +RI+V T P+
Sbjct: 265 RKILATA------GWD--HRIRVFHWRTMQPL 288
>sp|P15533|TRI30_MOUSE Tripartite motif protein 30 (Down regulatory protein of interleukin
2 receptor)
Length = 496
Score = 31.2 bits (69), Expect = 3.4
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +1
Query: 31 GIRGNRGYSEGIHIWEINWPLTMRGTHAVVGVSTEKCQLQQDRYVSLVGIDDESWGWDIV 210
G+ G S G H WE++ R ++G++ KC Q +GI ++
Sbjct: 338 GVLGYPALSSGKHYWEVD---ISRSDAWLLGLNDGKCAQPQLHSKEEMGIKK-----NLH 389
Query: 211 NRIK---VHGKETGNPICYEKYPDVKKIRKMCSMGKSFKI--------PSRIYLILDMYQ 357
++IK + + G + K P V K CS+ + I PSR+ + LD
Sbjct: 390 SQIKQNVLFQPKCGYWVIGMKNPSVYKAFDECSITHNSSILVISLPDRPSRVGVFLDRKA 449
Query: 358 GSLSF 372
G+LSF
Sbjct: 450 GTLSF 454
>sp|P57607|DEOB_BUCAI Phosphopentomutase (Phosphodeoxyribomutase)
Length = 407
Score = 31.2 bits (69), Expect = 3.4
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 196 GWDIVNRIKVHGKETGNPICYEKYPDVKKI---RKMCSMGKSFKIPSRIYLILDMYQGSL 366
G DI++R+ +T PI Y V +I + + +K+ + ILD Y +
Sbjct: 149 GTDIISRLGEEHIQTKKPIVYTSSDSVFQIACHEEFFGLSNLYKLCKTVRFILDRYNYKV 208
Query: 367 SFVIGNEFLG 396
+ VI F+G
Sbjct: 209 ARVIARPFIG 218
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex II protein Pcf11
Length = 1654
Score = 31.2 bits (69), Expect = 3.4
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 127 STEKCQLQQDRYVSLVGIDDESWGWDIVNRIKVHGKETGNPICYEKY 267
S E CQ Q ++Y D+E W + N I+V GK +P CYE Y
Sbjct: 1541 SCEICQEQFEQYW-----DEEEEEWHLKNAIRVDGK-IYHPSCYEDY 1581
>sp|Q91YY2|B4GT3_MOUSE Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 395
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 145 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 249
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 242 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 281
>sp|O60512|B4GT3_HUMAN Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 145 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 249
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
>sp|Q5NVN3|B4GT3_PONPY Beta-1,4-galactosyltransferase 3 (Beta-1,4-GalTase 3) (Beta4Gal-T3)
(b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 3) [Includes:
N-acetyllactosamine synthase (Nal synthetase);
Beta-N-acetylglucosaminylglycopeptide
beta-1,4-galactosyltransferase ;
Beta-N-acetylglucosaminyl-glycolipid
beta-1,4-galactosyltransferase ]
Length = 393
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 145 LQQDRYVSLVGIDDESWGW-----DIVNRIKVHGKETGNP 249
L D+Y+ + G +E WGW DI R+++ G + P
Sbjct: 240 LTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRP 279
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,589,537
Number of Sequences: 369166
Number of extensions: 1985447
Number of successful extensions: 4547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4541
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)