Planaria EST Database

DrC_00651

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00651
         (904 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34849|NU2M_APILI  NADH-ubiquinone oxidoreductase chain 2...    34   0.49 
sp|P24877|NU2M_ASCSU  NADH-ubiquinone oxidoreductase chain 2...    33   1.1  
sp|Q9J519|V216_FOWPV  Putative ankyrin repeat protein FPV216       33   1.4  
sp|P24889|NU2M_CAEEL  NADH-ubiquinone oxidoreductase chain 2...    32   1.9  
sp|P24499|ATP6_TRYBB  ATP synthase a chain (ATPase protein 6)      31   4.1  
sp|P36161|NU133_YEAST  Nucleoporin NUP133 (Nuclear pore prot...    31   5.4  
sp|Q8HEC1|NU2M_CAEBR  NADH-ubiquinone oxidoreductase chain 2...    31   5.4  
sp|Q8D342|ARNC_WIGBR  Undecaprenyl-phosphate 4-deoxy-4-forma...    30   9.2  

>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 333

 Score = 34.3 bits (77), Expect = 0.49
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 188 VLACIYVRFNIVYFIKIFDINK-LFVIRVLYYIFRWFFFVSIIS 316
           +LAC  + FN  YFI I ++NK +F+  ++ Y F +F  +S ++
Sbjct: 171 LLACSTI-FNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLN 213

>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 300

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = +2

Query: 167 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIF 286
           N VN+ ++L  + V F++ +FIKIF ++++F +  L+ +F
Sbjct: 195 NFVNWEVLLVFLNVPFSVSFFIKIFVLSEVFKLDGLFLLF 234

>sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216
          Length = 296

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +2

Query: 161 LVNLVNYILVLACIYVR-FNIVYFIKIFDINKLFVIRVLYYIFRWFFFVSIISGLL 325
           + +++N ++ +  +Y+R F ++Y+I I   N++ +  +LY   + F++  II  +L
Sbjct: 3   ITSIINNLIDIITLYIRIFYVIYYIAIKSKNQICIANILYTSIK-FYYTDIIDAVL 57

>sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 282

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 167 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWF-FFVSIIS 316
           N +N+   L  + + F++ +F+KIF ++++F     + +F  F  F+S+++
Sbjct: 196 NFINWETTLVFLNIPFSVSFFVKIFSLSEIFKYDSFFTLFLLFTMFLSVLA 246

>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
          Length = 229

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
 Frame = +2

Query: 23  FLYYGC*IKLILFSRLL*IYALVVRCLFCVNK*LLNILV*W*Y--VFDLVNLVNYILVLA 196
           FL++ C   L     LL +Y  V R  F V    L ++  +    +FDL   V   L L 
Sbjct: 2   FLFFFC--DLFWLRLLLCMYYCVSRLCFIVYFNCLMLIFDFLLFCLFDLYLFVGLCLFLL 59

Query: 197 CIYVRFNIV-----YFIKIFDINKLFVIRVLYYIFRWFFFVSIISGLL*NTLFI------ 343
             ++ FN+      Y I   ++  LF I  L YI   F F  +    L N L +      
Sbjct: 60  LWFMLFNLYSLILYYCITYLNLYLLFCIVFLLYIAFLFLFCFLCDFFLFNNLLVGDSFMD 119

Query: 344 --TLRFCNCLLKTF 379
              +RF  C L+ F
Sbjct: 120 VFFIRFLLCFLECF 133

>sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore protein NUP133)
          Length = 1157

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 135 KILSNYLLTQKRHLTTKA*IYNN 67
           K LSNY LTQ  HLTTK  + N+
Sbjct: 616 KTLSNYNLTQNEHLTTKTVVINS 638

>sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 282

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 167 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWF-FFVSIIS 316
           N VN+   L  + + F++ +F+KIF ++++F     + +   F  F+S+++
Sbjct: 196 NFVNWETALVFLNIPFSVSFFVKIFSLSEIFKFDSFFTLLLLFSMFLSVLA 246

>sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
           (Undecaprenyl-phosphate Ara4FN transferase) (Ara4FN
           transferase)
          Length = 323

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = +2

Query: 155 FDLVNLVNYILVLACIYVRFNIVYFIKIFDIN--KLFVIRVLYYIFRWFFFVSIISGLL* 328
           ++L+ L+  I  L    + FN++   K+F+I    +F+  ++  +F + FF+ I   +  
Sbjct: 209 YNLIKLIKLIYDLF-FCISFNLIKKNKMFNIFIILIFLAVLMSIVFFFIFFLKIKLNIFY 267

Query: 329 NTLFITLRFCNCLLKTFLI 385
             LFI +     L+K+F+I
Sbjct: 268 KILFIPIIITLFLIKSFII 286

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,881,054
Number of Sequences: 369166
Number of extensions: 1163371
Number of successful extensions: 1675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00651

  1. Dr_sW_015_B18
  2. Dr_sW_023_D13
  3. Dr_sW_028_P10
  4. Dr_sW_028_J05
  5. Dr_sW_019_M10
  6. Dr_sW_008_N01
  7. Dr_sW_017_C20
  8. Dr_sW_008_F09
  9. Dr_sW_002_O16
  10. Dr_sW_015_H02
  11. Dr_sW_017_I02
  12. Dr_sW_008_N17
  13. Dr_sW_018_J15
  14. Dr_sW_013_A07
  15. Dr_sW_028_M20
  16. Dr_sW_002_C05
  17. Dr_sW_002_B14
  18. Dr_sW_008_K23
  19. Dr_sW_001_J11
  20. Dr_sW_002_D18
  21. Dr_sW_018_F10
  22. Dr_sW_020_D07
  23. Dr_sW_011_F02
  24. Dr_sW_004_A13
  25. Dr_sW_013_L19
  26. Dr_sW_010_H10
  27. Dr_sW_003_G07
  28. Dr_sW_027_B22
  29. Dr_sW_024_J06
  30. Dr_sW_026_M09
  31. Dr_sW_016_M04
  32. Dr_sW_028_I20
  33. Dr_sW_008_I05
  34. Dr_sW_013_G20
  35. Dr_sW_012_K23
  36. Dr_sW_005_M18
  37. Dr_sW_012_D05
  38. Dr_sW_007_H24
  39. Dr_sW_010_G04
  40. Dr_sW_012_F11
  41. Dr_sW_001_E04
  42. Dr_sW_010_O18
  43. Dr_sW_018_M03
  44. Dr_sW_004_O14
  45. Dr_sW_005_E04
  46. Dr_sW_009_K14
  47. Dr_sW_005_K06
  48. Dr_sW_025_L01
  49. Dr_sW_022_A07
  50. Dr_sW_001_P05