Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D13
(372 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 30 1.7
sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2... 29 3.9
sp|Q18473|YE15_CAEEL Hypothetical protein C35A5.5 in chromo... 28 5.0
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 28 6.6
sp|P43245|MDR1_RAT Multidrug resistance protein 1 (P-glycop... 28 8.6
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 1 NLVNYILVLACIYVRFSIVYFIKSFDINK*FVIRVLYYIF 120
N VN+ ++L + V FS+ +FIK F +++ F + L+ +F
Sbjct: 195 NFVNWEVLLVFLNVPFSVSFFIKIFVLSEVFKLDGLFLLF 234
>sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 NLVNYILVLACIYVRFSIVYFIKSFDINK*FVIRVLYYIFRWF-FFVSIIS 150
N +N+ L + + FS+ +F+K F +++ F + +F F F+S+++
Sbjct: 196 NFINWETTLVFLNIPFSVSFFVKIFSLSEIFKYDSFFTLFLLFTMFLSVLA 246
>sp|Q18473|YE15_CAEEL Hypothetical protein C35A5.5 in chromosome V
Length = 520
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = +3
Query: 102 SIILYFSMVFFCFYY*RITIKYTFYHSEVLQLFIKNISYLI 224
++++YF ++ CFY+ I F +++ + L++ +I Y +
Sbjct: 24 NVVIYFVLILICFYF---IIPIYFPNNDKMNLWLSSIKYYL 61
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 153 SANNRNKKKPSKNII*YSYNKSLINIKTFYKINNTKPNIN 34
+ NN+N Y Y + +NIK +Y INN N N
Sbjct: 97 NVNNKNNNNIIMMKPMYQYMMNKLNIKFYYYINNNNMNTN 136
>sp|P43245|MDR1_RAT Multidrug resistance protein 1 (P-glycoprotein 1)
Length = 1277
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 183 EVLQLFIKNISYLIIGLLCSMIN 251
++L+L I YL++G+LC++IN
Sbjct: 697 QILKLNISEWPYLVVGVLCAVIN 719
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,501,848
Number of Sequences: 369166
Number of extensions: 493154
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)